Man page - cnvkit-access(1)
Packages contas this manual
- cnvkit-import-seg(1)
- cnvkit-breaks(1)
- cnvkit-heatmap(1)
- cnvkit-import-theta(1)
- cnvkit-autobin(1)
- cnvkit-sex(1)
- cnvkit-diagram(1)
- cnvkit-reference(1)
- cnvkit-genemetrics(1)
- cnvkit-segment(1)
- cnvkit-scatter(1)
- cnvkit-target(1)
- cnvkit-call(1)
- cnvkit-batch(1)
- cnvkit-metrics(1)
- cnvkit-segmetrics(1)
- cnvkit-coverage(1)
- cnvkit-export(1)
- cnvkit-import-picard(1)
- cnvkit-fix(1)
- cnvkit-bintest(1)
- cnvkit-import-rna(1)
- cnvkit-antitarget(1)
- cnvkit-access(1)
Package: cnvkit
apt-get install cnvkit
apt-get install cnvkit
Manuals in package:
Documentations in package:
Manual
| CNVKIT_ACCESS(1) | User Commands | CNVKIT_ACCESS(1) |
NAME
cnvkit_access - List the locations of accessible sequence regions in a FASTA file.
DESCRIPTION
usage: cnvkit.py access [-h] [-s MIN_GAP_SIZE] [-x EXCLUDE] [-o FILENAME]
- fa_fname
positional arguments:
- fa_fname
- Genome FASTA file name
options:
- -h, --help
- show this help message and exit
- -s MIN_GAP_SIZE, --min-gap-size MIN_GAP_SIZE
- Minimum gap size between accessible sequence regions. Regions separated by less than this distance will be joined together. [Default: 5000]
- -x EXCLUDE, --exclude EXCLUDE
- Additional regions to exclude, in BED format. Can be used multiple times.
- -o FILENAME, --output FILENAME
- Output file name
| July 2023 | cnvkit.py access 0.9.10 |