Man page - cnvkit-import-theta(1)
Packages contains this manual
- cnvkit-import-theta(1)
- cnvkit-coverage(1)
- cnvkit-metrics(1)
- cnvkit-import-seg(1)
- cnvkit-export(1)
- cnvkit-breaks(1)
- cnvkit-fix(1)
- cnvkit-segmetrics(1)
- cnvkit-batch(1)
- cnvkit-import-rna(1)
- cnvkit-bintest(1)
- cnvkit-diagram(1)
- cnvkit-call(1)
- cnvkit-autobin(1)
- cnvkit-access(1)
- cnvkit-antitarget(1)
- cnvkit-sex(1)
- cnvkit-segment(1)
- cnvkit-genemetrics(1)
- cnvkit-heatmap(1)
- cnvkit-target(1)
- cnvkit-import-picard(1)
- cnvkit-reference(1)
- cnvkit-scatter(1)
Package: cnvkit
apt-get install cnvkit
apt-get install cnvkit
Manuals in package:
Documentations in package:
Manual
CNVKIT_IMPORT-THETA
NAMEDESCRIPTION
positional arguments:
options:
NAME
cnvkit_import-theta - Convert THetA output to a BED-like, CNVkit-like tabular format.
Equivalently,
use the THetA results file to convert CNVkit .cns segments
to
integer copy number calls.
DESCRIPTION
usage: cnvkit.py import-theta [-h] [--ploidy PLOIDY] [-d DIRECTORY]
tumor_cns theta_results
positional arguments:
tumor_cns theta_results
options:
-h , --help
show this help message and exit
--ploidy PLOIDY
Ploidy of normal cells. [Default: 2]
-d DIRECTORY, --output-dir DIRECTORY
Output directory name.