Man page - cnvkit-antitarget(1)
Packages contains this manual
- cnvkit-import-theta(1)
- cnvkit-coverage(1)
- cnvkit-metrics(1)
- cnvkit-import-seg(1)
- cnvkit-export(1)
- cnvkit-breaks(1)
- cnvkit-fix(1)
- cnvkit-segmetrics(1)
- cnvkit-batch(1)
- cnvkit-import-rna(1)
- cnvkit-bintest(1)
- cnvkit-diagram(1)
- cnvkit-call(1)
- cnvkit-autobin(1)
- cnvkit-access(1)
- cnvkit-antitarget(1)
- cnvkit-sex(1)
- cnvkit-segment(1)
- cnvkit-genemetrics(1)
- cnvkit-heatmap(1)
- cnvkit-target(1)
- cnvkit-import-picard(1)
- cnvkit-reference(1)
- cnvkit-scatter(1)
apt-get install cnvkit
Manual
CNVKIT_ANTITARGET
NAMEDESCRIPTION
positional arguments:
options:
NAME
cnvkit_antitarget - Derive off-target ("antitarget") bins from target regions.
DESCRIPTION
usage: cnvkit.py
antitarget [-h] [-g FILENAME] [-a AVG_SIZE] [-m MIN_SIZE]
[-o FILENAME]
targets
positional arguments:
targets
BED or interval file listing the targeted regions.
options:
-h , --help
show this help message and exit
-g FILENAME, --access FILENAME
Regions of accessible sequence on chromosomes (.bed), as output by genome2access.py.
-a AVG_SIZE, --avg-size AVG_SIZE
Average size of antitarget bins (results are approximate). [Default: 150000]
-m MIN_SIZE, --min-size MIN_SIZE
Minimum size of antitarget bins (smaller regions are dropped). [Default: 1/16 avg size, calculated]
-o FILENAME, --output FILENAME
Output file name.