Man page - cnvkit-bintest(1)
Packages contains this manual
- cnvkit-import-theta(1)
- cnvkit-coverage(1)
- cnvkit-metrics(1)
- cnvkit-import-seg(1)
- cnvkit-export(1)
- cnvkit-breaks(1)
- cnvkit-fix(1)
- cnvkit-segmetrics(1)
- cnvkit-batch(1)
- cnvkit-import-rna(1)
- cnvkit-bintest(1)
- cnvkit-diagram(1)
- cnvkit-call(1)
- cnvkit-autobin(1)
- cnvkit-access(1)
- cnvkit-antitarget(1)
- cnvkit-sex(1)
- cnvkit-segment(1)
- cnvkit-genemetrics(1)
- cnvkit-heatmap(1)
- cnvkit-target(1)
- cnvkit-import-picard(1)
- cnvkit-reference(1)
- cnvkit-scatter(1)
Package: cnvkit
apt-get install cnvkit
apt-get install cnvkit
Manuals in package:
Documentations in package:
Manual
CNVKIT_BINTEST
NAMEDESCRIPTION
positional arguments:
options:
NAME
cnvkit_bintest - Test for single-bin copy number alterations.
DESCRIPTION
usage: cnvkit.py bintest [-h] [-s FILENAME] [-a ALPHA] [-t] [-o OUTPUT]
cnarray
positional arguments:
cnarray
Bin-level log2 ratios (.cnr file), as produced by ’fix’.
options:
-h , --help
show this help message and exit
-s FILENAME, --segment FILENAME
Segmentation calls (.cns), the output of the ’segment’ command).
-a ALPHA, --alpha ALPHA
Significance threhold. [Default: 0.005]
-t , --target
Test target bins only; ignore off-target bins.
-o OUTPUT, --output OUTPUT
Output filename.