Man page - bp_tree2pag(1)
Packages contains this manual
- bp_extract_feature_seq(1)
- bp_index(1)
- bp_taxid4species(1)
- bp_aacomp(1)
- bp_seqpart(1)
- bp_search2tribe(1)
- bp_dbsplit(1)
- bp_taxonomy2tree(1)
- bp_mutate(1)
- bp_process_gadfly(1)
- bp_find-blast-matches(1)
- bp_nexus2nh(1)
- bp_search2alnblocks(1)
- bp_biogetseq(1)
- bp_unflatten_seq(1)
- bp_fastam9_to_table(1)
- bp_tree2pag(1)
- bp_gccalc(1)
- bp_sreformat(1)
- bp_split_seq(1)
- bp_seqretsplit(1)
- bp_process_sgd(1)
- bp_make_mrna_protein(1)
- bp_revtrans-motif(1)
- bp_mask_by_search(1)
- bp_seqcut(1)
- bp_mrtrans(1)
- bp_seqret(1)
- bp_filter_search(1)
- bp_nrdb(1)
- bp_seqconvert(1)
- bp_search2gff(1)
- bp_bioflat_index(1)
- bp_oligo_count(1)
- bp_search2table(1)
- bp_genbank2gff3(1)
- bp_translate_seq(1)
- bp_local_taxonomydb_query(1)
- bp_fetch(1)
- bp_seq_length(1)
Package: bioperl
apt-get install bioperl
apt-get install bioperl
Manuals in package:
Documentations in package:
Manual
BP_TREE2PAG
NAMESYNOPSIS
DESCRIPTION
NAME
bp_tree2pag - convert Bio::TreeIO parseable format trees to pagel format
SYNOPSIS
bp_tree2pag -if
nexus -i file.nexus > file.pag
# OR pipe in through STDIN, and use newick format instead
cat file.newick | bp_tree2pag -if newick > file.nh
# OR specify an output and input
bp_tree2pag -o file.pag -i file.newick
DESCRIPTION
Convert TreeIO parseable files into Pagel format tree files. Be warned that pagel format only really supports a single tree per file so. Also Pagel parsing is not yet available in bioperl.