Man page - bp_split_seq(1)
Packages contains this manual
- bp_extract_feature_seq(1)
- bp_index(1)
- bp_taxid4species(1)
- bp_aacomp(1)
- bp_seqpart(1)
- bp_search2tribe(1)
- bp_dbsplit(1)
- bp_taxonomy2tree(1)
- bp_mutate(1)
- bp_process_gadfly(1)
- bp_find-blast-matches(1)
- bp_nexus2nh(1)
- bp_search2alnblocks(1)
- bp_biogetseq(1)
- bp_unflatten_seq(1)
- bp_fastam9_to_table(1)
- bp_tree2pag(1)
- bp_gccalc(1)
- bp_sreformat(1)
- bp_split_seq(1)
- bp_seqretsplit(1)
- bp_process_sgd(1)
- bp_make_mrna_protein(1)
- bp_revtrans-motif(1)
- bp_mask_by_search(1)
- bp_seqcut(1)
- bp_mrtrans(1)
- bp_seqret(1)
- bp_filter_search(1)
- bp_nrdb(1)
- bp_seqconvert(1)
- bp_search2gff(1)
- bp_bioflat_index(1)
- bp_oligo_count(1)
- bp_search2table(1)
- bp_genbank2gff3(1)
- bp_translate_seq(1)
- bp_local_taxonomydb_query(1)
- bp_fetch(1)
- bp_seq_length(1)
apt-get install bioperl
Manual
BP_SPLIT_SEQ
NAMESYNOPSIS
DESCRIPTION
FEEDBACK
Mailing Lists
Reporting Bugs
AUTHORS
NAME
bp_split_seq -
splits a sequence into equal sized chunks with an optional
overlapping range
SYNOPSIS
bp_split_seq -c 10000 [-o 1000] [-i] -f seq.in
DESCRIPTION
The script will split sequences into chunks
Mandatory Options:
-c Desired
length of the resulting sequences.
-f Input file (must be FASTA format).
Special Options:
-o Overlapping
range between the resulting sequences.
-i Create an index file with the resulting sequence files.
This is
useful if you want to pass this list as input arguments into
another programs (i.e. CLUSTAL, HMMER, etc.).
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org
- General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing
lists
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:
https://github.com/bioperl/bioperl-live/issues
AUTHORS
Ewan Birney
E<lt>birney-at-ebi.ac.ukE<gt>
Mauricio Herrera Cuadra E<lt>mauricio at
intelligenomes.comE<gt>
(some enhancements)