Man page - bp_nrdb(1)
Packages contains this manual
- bp_extract_feature_seq(1)
- bp_index(1)
- bp_taxid4species(1)
- bp_aacomp(1)
- bp_seqpart(1)
- bp_search2tribe(1)
- bp_dbsplit(1)
- bp_taxonomy2tree(1)
- bp_mutate(1)
- bp_process_gadfly(1)
- bp_find-blast-matches(1)
- bp_nexus2nh(1)
- bp_search2alnblocks(1)
- bp_biogetseq(1)
- bp_unflatten_seq(1)
- bp_fastam9_to_table(1)
- bp_tree2pag(1)
- bp_gccalc(1)
- bp_sreformat(1)
- bp_split_seq(1)
- bp_seqretsplit(1)
- bp_process_sgd(1)
- bp_make_mrna_protein(1)
- bp_revtrans-motif(1)
- bp_mask_by_search(1)
- bp_seqcut(1)
- bp_mrtrans(1)
- bp_seqret(1)
- bp_filter_search(1)
- bp_nrdb(1)
- bp_seqconvert(1)
- bp_search2gff(1)
- bp_bioflat_index(1)
- bp_oligo_count(1)
- bp_search2table(1)
- bp_genbank2gff3(1)
- bp_translate_seq(1)
- bp_local_taxonomydb_query(1)
- bp_fetch(1)
- bp_seq_length(1)
Package: bioperl
apt-get install bioperl
apt-get install bioperl
Manuals in package:
Documentations in package:
Manual
BP_NRDB
NAMESYNOPSIS
DESCRIPTION
AUTHOR
NAME
bp_nrdb.PLS - a script to emulate Warren Gish’s nrdb, make a unique sequence database from a set of input databases
SYNOPSIS
Usage:
bp_nrdb.PLS [options] file1 file2 file3
Alternative
usage
bp_nrdb.PLS -p [options] file1 id1 file2 id2 file3 id3
DESCRIPTION
This script will create a unique database of sequences (quasi-nonredundant). The options are:
-o filename -
the filename the db is written (STDOUT by default)
-a filename - the filename to append the db to
-l# - minimum required sequence length
-i - do not check for duplicates
-n# - max number of descriptions to report per seq
-d# - delimiter to use between consecutive descriptions
-p - use database id prefixes from command line
AUTHOR
Jason Stajich, jason-at-bioperl-dot-org