Man page - bp_make_mrna_protein(1)
Packages contas this manual
- bp_process_sgd(1)
- bp_genbank2gff3(1)
- bp_make_mrna_protein(1)
- bp_search2alnblocks(1)
- bp_seqret(1)
- bp_fetch(1)
- bp_seqretsplit(1)
- bp_mrtrans(1)
- bp_index(1)
- bp_extract_feature_seq(1)
- bp_seqcut(1)
- bp_nexus2nh(1)
- bp_aacomp(1)
- bp_gccalc(1)
- bp_unflatten_seq(1)
- bp_local_taxonomydb_query(1)
- bp_dbsplit(1)
- bp_process_gadfly(1)
- bp_oligo_count(1)
- bp_nrdb(1)
- bp_seqpart(1)
- bp_tree2pag(1)
- bp_taxonomy2tree(1)
- bp_filter_search(1)
- bp_bioflat_index(1)
- bp_taxid4species(1)
- bp_split_seq(1)
- bp_find-blast-matches(1)
- bp_mask_by_search(1)
- bp_mutate(1)
- bp_seqconvert(1)
- bp_search2gff(1)
- bp_fastam9_to_table(1)
- bp_seq_length(1)
- bp_biogetseq(1)
- bp_translate_seq(1)
- bp_search2table(1)
- bp_sreformat(1)
- bp_revtrans-motif(1)
- bp_search2tribe(1)
Package: bioperl
apt-get install bioperl
apt-get install bioperl
Manuals in package:
Documentations in package:
Manual
| BP_MAKE_MRNA_PROTEIN(1p) | User Contributed Perl Documentation | BP_MAKE_MRNA_PROTEIN(1p) |
NAME
bp_make_mrna_protein - Convert an input mRNA/cDNA sequence into protein
DESCRIPTION
Convert an input mRNA/cDNA sequence into protein using translate()
-f/--frame Specifies frame [0,1,2]
One can also specify:
-t/--terminator Stop Codon character (defaults to '*') -u/--unknown Unknown Protein character (defaults to 'X') -cds/--fullcds Expected Full CDS (with start and Stop codon) -throwOnError Throw error if no Full CDS (defaults to 0) -if/--format Input format (defaults to FASTA/Pearson) -of/--format Output format (defaults to FASTA/Pearson) -o/--output Output Filename (defaults to STDOUT) -i/--input Input Filename (defaults to STDIN) -ct/--codontable Codon table to use (defaults to '1')
See Bio::PrimarySeq for more information on codon tables and the translate() method
AUTHOR - Jason Stajich
Email jason-at-bioperl-dot-org
| 2021-08-15 | perl v5.32.1 |