Man page - bp_make_mrna_protein(1)
Packages contains this manual
- bp_extract_feature_seq(1)
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- bp_taxid4species(1)
- bp_aacomp(1)
- bp_seqpart(1)
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- bp_dbsplit(1)
- bp_taxonomy2tree(1)
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- bp_gccalc(1)
- bp_sreformat(1)
- bp_split_seq(1)
- bp_seqretsplit(1)
- bp_process_sgd(1)
- bp_make_mrna_protein(1)
- bp_revtrans-motif(1)
- bp_mask_by_search(1)
- bp_seqcut(1)
- bp_mrtrans(1)
- bp_seqret(1)
- bp_filter_search(1)
- bp_nrdb(1)
- bp_seqconvert(1)
- bp_search2gff(1)
- bp_bioflat_index(1)
- bp_oligo_count(1)
- bp_search2table(1)
- bp_genbank2gff3(1)
- bp_translate_seq(1)
- bp_local_taxonomydb_query(1)
- bp_fetch(1)
- bp_seq_length(1)
apt-get install bioperl
Manual
BP_MAKE_MRNA_PROTEIN
NAMEDESCRIPTION
AUTHOR - Jason Stajich
NAME
bp_make_mrna_protein - Convert an input mRNA/cDNA sequence into protein
DESCRIPTION
Convert an input mRNA/cDNA sequence into protein using translate()
-f/--frame Specifies frame [0,1,2]
One can also specify:
-t/--terminator
Stop Codon character (defaults to '*')
-u/--unknown Unknown Protein character (defaults to 'X')
-cds/--fullcds Expected Full CDS (with start and Stop codon)
-throwOnError Throw error if no Full CDS (defaults to 0)
-if/--format Input format (defaults to FASTA/Pearson)
-of/--format Output format (defaults to FASTA/Pearson)
-o/--output Output Filename (defaults to STDOUT)
-i/--input Input Filename (defaults to STDIN)
-ct/--codontable Codon table to use (defaults to '1')
See Bio::PrimarySeq for more information on codon tables and the translate() method
AUTHOR - Jason Stajich
Email jason-at-bioperl-dot-org