Man page - bp_taxid4species(1)
Packages contains this manual
- bp_extract_feature_seq(1)
- bp_index(1)
- bp_taxid4species(1)
- bp_aacomp(1)
- bp_seqpart(1)
- bp_search2tribe(1)
- bp_dbsplit(1)
- bp_taxonomy2tree(1)
- bp_mutate(1)
- bp_process_gadfly(1)
- bp_find-blast-matches(1)
- bp_nexus2nh(1)
- bp_search2alnblocks(1)
- bp_biogetseq(1)
- bp_unflatten_seq(1)
- bp_fastam9_to_table(1)
- bp_tree2pag(1)
- bp_gccalc(1)
- bp_sreformat(1)
- bp_split_seq(1)
- bp_seqretsplit(1)
- bp_process_sgd(1)
- bp_make_mrna_protein(1)
- bp_revtrans-motif(1)
- bp_mask_by_search(1)
- bp_seqcut(1)
- bp_mrtrans(1)
- bp_seqret(1)
- bp_filter_search(1)
- bp_nrdb(1)
- bp_seqconvert(1)
- bp_search2gff(1)
- bp_bioflat_index(1)
- bp_oligo_count(1)
- bp_search2table(1)
- bp_genbank2gff3(1)
- bp_translate_seq(1)
- bp_local_taxonomydb_query(1)
- bp_fetch(1)
- bp_seq_length(1)
apt-get install bioperl
Manual
BP_TAXID4SPECIES
NAMESYNOPSIS
DESCRIPTION
FEEDBACK
Mailing Lists
Reporting Bugs
AUTHOR
NAME
bp_taxid4species - simple script which returns the NCBI Taxonomic id for a requested species
SYNOPSIS
bp_taxid4species [-v] [-p] [-h] "Genus1 species1" "Genus2 species2"
Options:
-v verbose
-p plain
-h help
DESCRIPTION
This simple script shows how to get the taxa id from NCBI Entrez and will return a list of taxa ids for requested organisms.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org
- General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing
lists
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:
https://github.com/bioperl/bioperl-live/issues
AUTHOR
Jason Stajich jason-at-bioperl-dot-org