Man page - trees-to-srq(1)

Packages contains this manual

Package:  bali-phy
apt-get install bali-phy

Manuals in package:
• alignment-consensus(1)
• cut-range(1)
• alignment-thin(1)
• alignment-max(1)
• bali-phy-pkg(1)
• bp-analyze(1)
• alignment-draw(1)
• summarize-ancestors(1)
• extract-ancestors(1)
• stats-select(1)
• mctree-mean-lengths(1)
• trees-consensus(1)
• alignment-find(1)
• bali-phy(1)
• statreport(1)
• alignment-indices(1)
• tree-mean-lengths(1)
• pickout(1)
• draw-tree(1)
• alignment-gild(1)
• alignment-distances(1)
• alignment-info(1)
• tree-tool(1)
• alignments-diff(1)
• trees-bootstrap(1)
• mcon-tool(1)
• alignment-cat(1)
• alignment-chop-internal(1)
• alignment-translate(1)
• trees-distances(1)
• bali-subsample(1)
Documentations in package:
• bali-phy

Manual

tree-to-srq

NAME
SYNOPSIS
DESCRIPTION
ALLOWED OPTIONS:
REPORTING BUGS:
AUTHORS

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NAME

tree-to-srq - Generate Scaled Regeneration Quantile (SRQ) plot

SYNOPSIS

tree-to-srq predicates-file sampled-trees [ sampled-trees ...]

DESCRIPTION

Generate Scaled Regeneration Quantile (SRQ) plot

ALLOWED OPTIONS:

-h , –help

produce help message

–files arg

tree samples to examine

–predicates arg

predicates to examine

-s arg (=10%), –skip arg (=10%)

Number of trees to skip.

-x arg (=1), –subsample arg (=1)

factor by which to sub-sample

-u arg , –until arg

Read until this number of trees.

–max-points arg

maximum number of points to record

–mode arg (=SRQ)

SRQ, sum, or values

–invert

consider the inverse of each event instead

–no-scale-x

don’t scale X

–no-scale-y

don’t scale Y

REPORTING BUGS:

BAli-Phy online help: http://www.bali-phy.org/docs.php .

Please send bug reports to bali-phy-users@googlegroups.com .

AUTHORS

Benjamin Redelings.

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