Man page - alignment-info(1)
Packages contains this manual
- alignment-consensus(1)
- cut-range(1)
- alignment-thin(1)
- alignment-max(1)
- bali-phy-pkg(1)
- bp-analyze(1)
- alignment-draw(1)
- summarize-ancestors(1)
- extract-ancestors(1)
- stats-select(1)
- mctree-mean-lengths(1)
- trees-consensus(1)
- alignment-find(1)
- bali-phy(1)
- statreport(1)
- alignment-indices(1)
- tree-mean-lengths(1)
- pickout(1)
- draw-tree(1)
- alignment-gild(1)
- alignment-distances(1)
- alignment-info(1)
- tree-tool(1)
- alignments-diff(1)
- trees-bootstrap(1)
- mcon-tool(1)
- alignment-cat(1)
- alignment-chop-internal(1)
- alignment-translate(1)
- trees-distances(1)
- bali-subsample(1)
apt-get install bali-phy
Manual
alignment-info
NAMESYNOPSIS
DESCRIPTION
ALLOWED OPTIONS:
REPORTING BUGS:
AUTHORS
NAME
alignment-info - Show useful statistics about the alignment.
SYNOPSIS
alignment-info alignment-file [ tree-file ] [OPTIONS]
DESCRIPTION
Show useful statistics about the alignment.
ALLOWED OPTIONS:
-h , âhelp
produce help message
âalign arg
file with sequences and initial alignment
âtree arg
file with initial tree
âalphabet arg
specify the alphabet: DNA, RNA, Amino-Acids, Triplets, or Codons
-e , âerase-empty-columns
Remove columns with no characters (all gaps).
-N , âshow-names
Print the sequence-names and exit
-L , âshow-lengths
Print the sequence-lengths and exit
REPORTING BUGS:
BAli-Phy online help: http://www.bali-phy.org/docs.php .
Please send bug reports to bali-phy-users@googlegroups.com .
AUTHORS
Benjamin Redelings.