Man page - alignment-consensus(1)
Packages contas this manual
- alignment-distances(1)
- alignment-max(1)
- bali-phy(1)
- tree-mean-lengths(1)
- mcon-tool(1)
- extract-ancestors(1)
- cut-range(1)
- alignment-indices(1)
- alignment-thin(1)
- stats-select(1)
- pickout(1)
- trees-consensus(1)
- alignment-gild(1)
- alignment-chop-internal(1)
- summarize-ancestors(1)
- draw-tree(1)
- bali-phy-pkg(1)
- mctree-mean-lengths(1)
- tree-tool(1)
- alignment-find(1)
- trees-bootstrap(1)
- alignment-translate(1)
- trees-distances(1)
- alignment-cat(1)
- statreport(1)
- bp-analyze(1)
- alignment-info(1)
- alignment-draw(1)
- alignments-diff(1)
- alignment-consensus(1)
- bali-subsample(1)
Package: bali-phy
apt-get install bali-phy
apt-get install bali-phy
Manuals in package:
Documentations in package:
Manual
| alignment-consensus(1) | alignment-consensus(1) |
NAME
alignment-consensus - Construct a consensus alignment to summarize an alignment sample.
SYNOPSIS
alignment-consensus alignments-file [alignments-file ...] [OPTIONS]
DESCRIPTION
Construct a consensus alignment to summarize an alignment sample.
ALLOWED OPTIONS:
- -h, –help
- produce help message
- –alphabet arg
- Specify the alphabet: DNA, RNA, Amino-Acids, Amino-Acids+stop, Triplets, Codons, or Codons+stop.
- -s arg (=0), –skip arg (=0)
- number of alignment samples to skip
- -m arg (=1000), –max arg (=1000)
- maximum number of alignments to analyze
- –strict arg
- ignore events below this probability
- –cutoff arg
- ignore events below this probability
- –uncertainty arg
- file-name for AU uncertainty vs level
- –chop-to arg
- keep only the first arg taxa
- -V, –verbose
- Output more log messages on stderr.
REPORTING BUGS:
BAli-Phy online help: http://www.bali-phy.org/docs.php.
Please send bug reports to bali-phy-users@googlegroups.com.
AUTHORS
Benjamin Redelings.
| Feb 2018 |