Man page - tree-tool(1)
Packages contas this manual
- alignment-distances(1)
- alignment-max(1)
- bali-phy(1)
- tree-mean-lengths(1)
- mcon-tool(1)
- extract-ancestors(1)
- cut-range(1)
- alignment-indices(1)
- alignment-thin(1)
- stats-select(1)
- pickout(1)
- trees-consensus(1)
- alignment-gild(1)
- alignment-chop-internal(1)
- summarize-ancestors(1)
- draw-tree(1)
- bali-phy-pkg(1)
- mctree-mean-lengths(1)
- tree-tool(1)
- alignment-find(1)
- trees-bootstrap(1)
- alignment-translate(1)
- trees-distances(1)
- alignment-cat(1)
- statreport(1)
- bp-analyze(1)
- alignment-info(1)
- alignment-draw(1)
- alignments-diff(1)
- alignment-consensus(1)
- bali-subsample(1)
Package: bali-phy
apt-get install bali-phy
apt-get install bali-phy
Manuals in package:
Documentations in package:
Manual
| tree-tool(1) | tree-tool(1) |
NAME
tree-tool - Perform various operations on Newick trees.
SYNOPSIS
tree-tool tree-file [OPTIONS]
DESCRIPTION
Perform various operations on Newick trees.
GENERAL OPTIONS:
- -h, –help
- produce help message
- -V, –verbose
- Output more log messages on stderr.
MODIFICATION OPTIONS:
- –prune arg
- Comma-separated taxa to remove
- –root
- Find a root position
- –resolve
- Resolve polytomies
- –remove-root-branch
- Remove single branch from root.
- –remove-root-branches
- Ensure root is not a tip.
- –remove-knuckles
- Remove degree-2 nodes.
- –scale arg
- Scale branch-lengths by factor
- –strip-internal-names
- Remove internal node names
- –name-all-nodes
- Add node names
OUTPUT OPTIONS:
- –length
- Report the total tree length
- –diameter
- Report the tree diameter
- –count-leaves
- Show the number of leaves
- –count-nodes
- Show the number of nodes
- –show-leaves
- Show the leaf names
- –show-nodes
- Show the node names
REPORTING BUGS:
BAli-Phy online help: http://www.bali-phy.org/docs.php.
Please send bug reports to bali-phy-users@googlegroups.com.
AUTHORS
Benjamin Redelings.
| Feb 2018 |