Man page - draw-tree(1)

Packages contains this manual

Package:  bali-phy
apt-get install bali-phy

Manuals in package:
• alignment-consensus(1)
• cut-range(1)
• alignment-thin(1)
• alignment-max(1)
• bali-phy-pkg(1)
• bp-analyze(1)
• alignment-draw(1)
• summarize-ancestors(1)
• extract-ancestors(1)
• stats-select(1)
• mctree-mean-lengths(1)
• trees-consensus(1)
• alignment-find(1)
• bali-phy(1)
• statreport(1)
• alignment-indices(1)
• tree-mean-lengths(1)
• pickout(1)
• draw-tree(1)
• alignment-gild(1)
• alignment-distances(1)
• alignment-info(1)
• tree-tool(1)
• alignments-diff(1)
• trees-bootstrap(1)
• mcon-tool(1)
• alignment-cat(1)
• alignment-chop-internal(1)
• alignment-translate(1)
• trees-distances(1)
• bali-subsample(1)
Documentations in package:
• bali-phy

Manual

draw-tree

NAME
SYNOPSIS
DESCRIPTION
INPUT OPTIONS:
REPORTING BUGS:
AUTHORS

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NAME

draw-tree - Draw NEWICK (and some other) formatted files.

SYNOPSIS

draw-tree [OPTIONS] tree file

DESCRIPTION

Draw NEWICK (and some other) formatted files.

INPUT OPTIONS:

-h , –help

Produce help message

-W arg (=8.5), –width arg (=8.5)

Page width in inches

-H arg (=11), –height arg (=11)

Page height in inches

–file arg

predicates to examine

–output arg (=pdf)

Type of output to write: tree, topology, mtree, lengths, dot, ps, pdf, svg

–out arg

Output filename (without extension)

–full

Consider only full splits by collapsing any partial splits.

–iterations arg (=2)

Number of iterations for layout algorithm

–font-size arg (=10)

Font size for taxon names

–angle_iterations arg (=0)

Number of iterations for layout algorithm with small-angle penalties

–labels arg (=horizontal)

Are the names horizontal or angled?

–collapse

Give node lengths evenly to neighboring branches and zero the node lengths.

–layout arg (=graph)

Layout method: graph, equal-angle, equal-daylight, etc.

–greedy

For equal-daylight layout: take as much daylight as possible?

–tree-layout-initial

Start an energy layout with positions from the equal-angle layout - only for multifurcating trees

–no-shade

For equal-daylight layout: reject rotations that shade other groups?

–draw-clouds arg

Draw wandering-ranges in MC trees as clouds.

–seed arg

Random seed

–verbose

Output more log messages on stderr.

REPORTING BUGS:

BAli-Phy online help: http://www.bali-phy.org/docs.php .

Please send bug reports to bali-phy-users@googlegroups.com .

AUTHORS

Benjamin Redelings.

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