Man page - mctree-mean-lengths(1)

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Package:  bali-phy
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Manuals in package:
• alignment-consensus(1)
• cut-range(1)
• alignment-thin(1)
• alignment-max(1)
• bali-phy-pkg(1)
• bp-analyze(1)
• alignment-draw(1)
• summarize-ancestors(1)
• extract-ancestors(1)
• stats-select(1)
• mctree-mean-lengths(1)
• trees-consensus(1)
• alignment-find(1)
• bali-phy(1)
• statreport(1)
• alignment-indices(1)
• tree-mean-lengths(1)
• pickout(1)
• draw-tree(1)
• alignment-gild(1)
• alignment-distances(1)
• alignment-info(1)
• tree-tool(1)
• alignments-diff(1)
• trees-bootstrap(1)
• mcon-tool(1)
• alignment-cat(1)
• alignment-chop-internal(1)
• alignment-translate(1)
• trees-distances(1)
• bali-subsample(1)
Documentations in package:
• bali-phy

Manual

tree-mean-lengths

NAME
SYNOPSIS
DESCRIPTION
ALLOWED OPTIONS:
REPORTING BUGS:
AUTHORS

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NAME

tree-mean-lengths - Compute the mean lengths for branches in the given topology.

SYNOPSIS

tree-mean-lengths tree-file < in-file

DESCRIPTION

Compute the mean lengths for branches in the given topology.

ALLOWED OPTIONS:

-h , –help

produce help message

–tree arg

tree to re-root

-s arg (=0), –skip arg (=0)

number of tree samples to skip

-u arg , –until arg

Read until this number of trees.

–prune arg

Comma-separated taxa to remove

-x arg (=1), –subsample arg (=1)

factor by which to subsample

–var

report standard deviation of branch lengths instead of mean

–no-node-lengths

ignore branches not in the specified topology

–safe

Don’t die if no trees match the topology

–drop-partial

Remove partial branches

–seed arg

random seed

-V , –verbose

Output more log messages on stderr.

REPORTING BUGS:

BAli-Phy online help: http://www.bali-phy.org/docs.php .

Please send bug reports to bali-phy-users@googlegroups.com .

AUTHORS

Benjamin Redelings.

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