Man page - mctree-mean-lengths(1)
Packages contas this manual
- alignment-distances(1)
- alignment-max(1)
- bali-phy(1)
- tree-mean-lengths(1)
- mcon-tool(1)
- extract-ancestors(1)
- cut-range(1)
- alignment-indices(1)
- alignment-thin(1)
- stats-select(1)
- pickout(1)
- trees-consensus(1)
- alignment-gild(1)
- alignment-chop-internal(1)
- summarize-ancestors(1)
- draw-tree(1)
- bali-phy-pkg(1)
- mctree-mean-lengths(1)
- tree-tool(1)
- alignment-find(1)
- trees-bootstrap(1)
- alignment-translate(1)
- trees-distances(1)
- alignment-cat(1)
- statreport(1)
- bp-analyze(1)
- alignment-info(1)
- alignment-draw(1)
- alignments-diff(1)
- alignment-consensus(1)
- bali-subsample(1)
Package: bali-phy
apt-get install bali-phy
apt-get install bali-phy
Manuals in package:
Documentations in package:
Manual
| tree-mean-lengths(1) | tree-mean-lengths(1) |
NAME
tree-mean-lengths - Compute the mean lengths for branches in the given topology.
SYNOPSIS
tree-mean-lengths tree-file < in-file
DESCRIPTION
Compute the mean lengths for branches in the given topology.
ALLOWED OPTIONS:
- -h, –help
- produce help message
- –tree arg
- tree to re-root
- -s arg (=0), –skip arg (=0)
- number of tree samples to skip
- -u arg, –until arg
- Read until this number of trees.
- –prune arg
- Comma-separated taxa to remove
- -x arg (=1), –subsample arg (=1)
- factor by which to subsample
- –var
- report standard deviation of branch lengths instead of mean
- –no-node-lengths
- ignore branches not in the specified topology
- –safe
- Don’t die if no trees match the topology
- –drop-partial
- Remove partial branches
- –seed arg
- random seed
- -V, –verbose
- Output more log messages on stderr.
REPORTING BUGS:
BAli-Phy online help: http://www.bali-phy.org/docs.php.
Please send bug reports to bali-phy-users@googlegroups.com.
AUTHORS
Benjamin Redelings.
| Feb 2018 |