Man page - alignments-diff(1)
Packages contas this manual
- alignment-distances(1)
- alignment-max(1)
- bali-phy(1)
- tree-mean-lengths(1)
- mcon-tool(1)
- extract-ancestors(1)
- cut-range(1)
- alignment-indices(1)
- alignment-thin(1)
- stats-select(1)
- pickout(1)
- trees-consensus(1)
- alignment-gild(1)
- alignment-chop-internal(1)
- summarize-ancestors(1)
- draw-tree(1)
- bali-phy-pkg(1)
- mctree-mean-lengths(1)
- tree-tool(1)
- alignment-find(1)
- trees-bootstrap(1)
- alignment-translate(1)
- trees-distances(1)
- alignment-cat(1)
- statreport(1)
- bp-analyze(1)
- alignment-info(1)
- alignment-draw(1)
- alignments-diff(1)
- alignment-consensus(1)
- bali-subsample(1)
Package: bali-phy
apt-get install bali-phy
apt-get install bali-phy
Manuals in package:
Documentations in package:
Manual
| alignments-diff(1) | alignments-diff(1) |
NAME
alignments-diff - Align two alignments for comparison.
SYNOPSIS
alignments-diff alignment-file1 alignment-file2 [OPTIONS]
DESCRIPTION
Align two alignments for comparison.
GENERAL OPTIONS:
- -h, –help
- produce help message
INPUT OPTIONS:
- –alphabet arg
- set to `Codons' to prefer codon alphabets
OUTPUT OPTIONS:
- –merge
- Stack the two alignments into one alignment with duplicate names
- –dual
- Write out the two aligned alignments separately
- –fill arg (=gap)
- blank columns filled with: gap or unknown
- -d arg, –differences-file arg
- Filename to store differences in AU format
- –blocksize arg (=20)
- Width of blocks of same color
- –classes arg (=1)
- Number of groups for non-matching characters
REPORTING BUGS:
BAli-Phy online help: http://www.bali-phy.org/docs.php.
Please send bug reports to bali-phy-users@googlegroups.com.
AUTHORS
Benjamin Redelings.
| Feb 2018 |