Man page - cmtk-volume_injection(1)
Packages contains this manual
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apt-get install cmtk
Manual
volume_injection
NAMESYNOPSIS
DESCRIPTION
OPTIONS
Global Toolkit Options (these are shared by all CMTK tools)
Input Options
Reconstruction Grid Options
Volume Injection Options
Output Options
AUTHORS
LICENSE
BUGS
ACKNOWLEDGMENTS
NAME
volume_injection - Volume injection
SYNOPSIS
volume_injection [options] refImage xform0 inImage0 [xform1 inImage1 ...]
DESCRIPTION
Reconstruction a high-resolution volume from multiple co-registered (low-resolution) images using forward volume injection
OPTIONS
Global Toolkit Options (these are shared by all CMTK tools)
--help
Write list of basic command line options to standard output.
--help-all
Write complete list of basic and advanced command line options to standard output.
--wiki
Write list of command line options to standard output in MediaWiki markup.
--man
Write man page source in ’nroff’ markup to standard output.
--version
Write toolkit version to standard output.
--echo
Write the current command line to standard output.
--verbose-level <integer>
Set verbosity level.
--verbose , -v
Increment verbosity level by 1 (deprecated; supported for backward compatibility).
--threads <integer>
Set maximum number of parallel threads (for POSIX threads and OpenMP).
Input Options
--exclude-first-image , -x
Exclude first image from reconstruction as a separate registration target image)
--pass-weight <string> , -W <string>
Set contribution weight for a pass in the form ’pass:weight’
Reconstruction Grid Options
--recon-grid <string>
Define reconstruction grid as Nx,Ny,Nz:dX,dY,dZ[:Ox,Oy,Oz] (dims:pixel:offset)
--recon-grid-path <string> , -R <string>
Give path to grid that defines reconstructed image grid [including offset] [Default: NONE]
--crop <string>
Crop reference to pixel region x0,y0,z1:x1,y1,z1
Volume Injection Options
--isotropic-injection
Use isotropic volume injection [default: scaled with pass image pixel size per dimension]
--injection-kernel-sigma <double> , -S <double>
Gauss contribution [Default: 1]
--injection-kernel-radius <integer> , -r <integer>
VolumeInjectionRadius of affected pixel [Default: 0]
Output Options
--output <string> , -o <string>
Output image path [Default: volume_injection.nii ]
--write-images-as-float , -F
Write output images as floating point [default: same as input]
AUTHORS
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, Daniel B. Russakoff, and Yaroslav Halchenko
LICENSE
http://www.fsf.org/licensing/licenses/gpl.html
BUGS
Report bugs at http://nitrc.org/projects/cmtk/
ACKNOWLEDGMENTS
CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium on Alcohol and Neurodevelopment in Adolescence (N-CANDA): Data Integration Component. From April 2009 through September 2011, CMTK development and maintenance was supported by the NIBIB under Grant EB008381.