Man page - cmtk-mk_analyze_hdr(1)
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apt-get install cmtk
Manual
mk_analyze_hdr
NAMESYNOPSIS
DESCRIPTION
OPTIONS
Global Toolkit Options (these are shared by all CMTK tools)
Main Options
AUTHORS
LICENSE
BUGS
ACKNOWLEDGMENTS
NAME
mk_analyze_hdr - Make Analyze header file
SYNOPSIS
mk_analyze_hdr [options] [output.nii]
DESCRIPTION
Make header file according Analzye 7.5 format based on user-supplied parameters for geometry, data type, orientation, etc.
OPTIONS
Global Toolkit Options (these are shared by all CMTK tools)
--help
Write list of basic command line options to standard output.
--help-all
Write complete list of basic and advanced command line options to standard output.
--wiki
Write list of command line options to standard output in MediaWiki markup.
--man
Write man page source in ’nroff’ markup to standard output.
--version
Write toolkit version to standard output.
--echo
Write the current command line to standard output.
--verbose-level <integer>
Set verbosity level.
--verbose , -v
Increment verbosity level by 1 (deprecated; supported for backward compatibility).
--threads <integer>
Set maximum number of parallel threads (for POSIX threads and OpenMP).
Main Options
--dims <string> , -D <string>
Set dimensions in voxels
--voxel <string> , -V <string>
Set voxel size in [mm]
--offset <float> , -O <float>
Binary data file offset [Default: disabled]
--byte , -b
8 bits, unsigned (this is the default)
--char , -c
8 bits, signed
--short , -s
16 bits, signed
--ushort , -u
16 bits, unsigned
--int , -i
32 bits signed
--float , -f
32 bits floating point
--double , -d
64 bits floating point
--big-endian , -B
Big endian data [This is the default]
--little-endian , -L
Little endian data
--axial
Set slice orientation to axial (this is the default)
--axial-flip
Set slice orientation to reverse axial
--sagittal
Set slice orientation to sagittal
--sagittal-flip
Set slice orientation to reverse sagittal
--coronal
Set slice orientation to corona;
--coronal-flip
Set slice orientation to reverse coronal
--legacy
Legacy mode; do not write ’SRI1’ tag into header
--SRI1
Force ’SRI1’ tag even if not present in imported header
--import <string> , -I <string>
Import data from given header file. [Default: NONE]
--description <string>
Set description string [max. 80 characters] [Default: NONE]
AUTHORS
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, Daniel B. Russakoff, and Yaroslav Halchenko
LICENSE
http://www.fsf.org/licensing/licenses/gpl.html
BUGS
Report bugs at http://nitrc.org/projects/cmtk/
ACKNOWLEDGMENTS
CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium on Alcohol and Neurodevelopment in Adolescence (N-CANDA): Data Integration Component. From April 2009 through September 2011, CMTK development and maintenance was supported by the NIBIB under Grant EB008381.