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Manual

mk_phantom_3d(1)

The Computational Morphometry Toolkit

mk_phantom_3d(1)

NAME

mk_phantom_3d - Generate phantom image

SYNOPSIS

mk_phantom_3d [options] command0 [command1 ...] sphere x,y,z radius value box x0,y0,z0 x1,y1,z1 value

DESCRIPTION

Generate 3D digital phantom images using a selection of drawing commands

OPTIONS

Global Toolkit Options (these are shared by all CMTK tools)

--help: Write list of basic command line options to standard output.
--help-all: Write complete list of basic and advanced command line options to standard output.
--wiki: Write list of command line options to standard output in MediaWiki markup.
--man: Write man page source in 'nroff' markup to standard output.
--version: Write toolkit version to standard output.
--echo: Write the current command line to standard output.
--verbose-level <integer>: Set verbosity level.
--verbose, -v: Increment verbosity level by 1 (deprecated; supported for backward compatibility).
--threads <integer>: Set maximum number of parallel threads (for POSIX threads and OpenMP).

Main Options

--dims <string>, -D <string>: Set dimensions in voxels
--voxel <string>, -V <string>: Set voxel size in [mm]
--coordinates: Coordinate specification mode. Supported values: "indexed", "absolute", "relative", where the default is "indexed", or use one of the following:

--indexed: Use grid indexes to specify coordinates. For each dimension, the valid value range is [0,Dims-1]. [This is the default]
--absolute: Use absolute volume coordinates. For each dimension, the valid range is [0,FOV].
--relative: Use relative volume coordinates. For each dimension, the valid range is [0,1].

--char, -c: 8 bits, signed
--byte, -b: 8 bits, unsigned
--short, -s: 16 bits, signed
--ushort, -u: 16 bits, unsigned [This is the default]
--int, -i: 32 bits signed
--float, -f: 32 bits floating point
--double, -d: 64 bits floating point
--bg <double>, -B <double>: Set the image background value (use to initialize newly created image). [Default: 0]
--import <string>, -I <string>: Import image [Default: NONE]
--import-grid <string>: Import image grid only, ignore data [Default: disabled]
--outfile <string>, -o <string>: File name for output image [Default: phantom.nii ]

AUTHORS

Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, Daniel B. Russakoff, and Yaroslav Halchenko

LICENSE

http://www.fsf.org/licensing/licenses/gpl.html

BUGS

Report bugs at http://nitrc.org/projects/cmtk/

ACKNOWLEDGMENTS

CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium on Alcohol and Neurodevelopment in Adolescence (N-CANDA): Data Integration Component. From April 2009 through September 2011, CMTK development and maintenance was supported by the NIBIB under Grant EB008381.

Feb 26 2025

CMTK 3.3.1p2