Man page - cmtk-groupwise_init(1)
Packages contas this manual
- cmtk-lvote(1)
- cmtk-hausdorff(1)
- cmtk-pxsearch(1)
- cmtk-sba(1)
- cmtk-filter(1)
- cmtk-mk_analyze_hdr(1)
- cmtk-mcwarp(1)
- cmtk-groupwise_warp(1)
- cmtk-split(1)
- cmtk-describe(1)
- cmtk-interleaved_bad_slices(1)
- cmtk-concat_affine(1)
- cmtk-lsba(1)
- cmtk-volume_injection(1)
- cmtk-vtkxform(1)
- cmtk-probe(1)
- cmtk-groupwise_init(1)
- cmtk-fit_affine_xform(1)
- cmtk-reformatx(1)
- cmtk-sympl(1)
- cmtk-fibxform(1)
- cmtk-mk_phantom_3d(1)
- cmtk-geomatch(1)
- cmtk-dof2mat(1)
- cmtk-warp(1)
- cmtk-levelset(1)
- cmtk-unwarp_image_phantom(1)
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- cmtk-fit_affine_xform_landmarks(1)
- cmtk-warp2ps(1)
- cmtk-similarity(1)
- cmtk-reorient(1)
- cmtk-avg_adm(1)
- cmtk-stream_pixels(1)
- cmtk-xform2itk(1)
- cmtk-average_labels(1)
- cmtk-mk_nifti_hdr(1)
- cmtk-convertx(1)
- cmtk-registration(1)
- cmtk-histogram(1)
- cmtk-mcaffine(1)
- cmtk-fit_spline_xform(1)
- cmtk-jidb(1)
- cmtk-gmm(1)
- cmtk-vol2csv(1)
- cmtk-mk_adni_phantom(1)
- cmtk-fit_spline_dfield(1)
- cmtk-symplx(1)
- cmtk-destripe(1)
- cmtk-imagemath(1)
- cmtk-gregxform(1)
- cmtk-fib2image(1)
- cmtk-average_affine(1)
- cmtk-dbtool(1)
- cmtk-unsplit(1)
- cmtk-registrationx(1)
- cmtk-xform2dfield(1)
- cmtk-groupwise_affine(1)
- cmtk-fit_affine_dfield(1)
- cmtk-lmsba(1)
- cmtk-asegment(1)
- cmtk-statistics(1)
- cmtk-film(1)
- cmtk-ttest(1)
- cmtk-dcm2image(1)
- cmtk-sequence(1)
- cmtk-streamxform(1)
- cmtk-glm(1)
- cmtk-volume_reconstruction(1)
- cmtk-warpx(1)
- cmtk-mrbias(1)
- cmtk-xform2scalar(1)
- cmtk-detect_adni_phantom(1)
- cmtk(1)
- cmtk-dwi_mask_bad_slices(1)
- cmtk-make_initial_affine(1)
- cmtk-regress(1)
- cmtk-detect_spheres_matched_filter(1)
- cmtk-iterative_shape_averaging(1)
- cmtk-mat2dof(1)
- cmtk-average_images(1)
- cmtk-sbai(1)
Package: cmtk
apt-get install cmtk
apt-get install cmtk
Manuals in package:
Documentations in package:
Manual
| groupwise_init(1) | The Computational Morphometry Toolkit | groupwise_init(1) |
NAME
groupwise_init - Affine initialization for groupwise registration
SYNOPSIS
groupwise_init [options] image0 [image1 ...]
DESCRIPTION
Compute initial affine alignment for a group of input images, which can be used as an input for groupwise registration
OPTIONS
Global Toolkit Options (these are shared by all CMTK tools)
- --help
- Write list of basic command line options to standard output.
- --help-all
- Write complete list of basic and advanced command line options to standard output.
- --wiki
- Write list of command line options to standard output in MediaWiki markup.
- --man
- Write man page source in 'nroff' markup to standard output.
- --version
- Write toolkit version to standard output.
- --echo
- Write the current command line to standard output.
- --verbose-level <integer>
- Set verbosity level.
- --verbose, -v
- Increment verbosity level by 1 (deprecated; supported for backward compatibility).
- --threads <integer>
- Set maximum number of parallel threads (for POSIX threads and OpenMP).
Main Options
- --template <string>, -t <string>
- Input filename for pre-defined template image. [Default: NONE]
- --output-root <string>, -O <string>
- Root directory for all output files. [Default: NONE]
- --output <string>, -o <string>
- Output filename for groupwise registration archive. [Default: groupwise.xforms ]
- --output-average <string>
- Output filename for registered average image. [Default: average.nii ]
- --average-cubic
- Use cubic (rather than linear) interpolation for average image.
- --no-output-average
- Do not write average image.
- --align-centers-of-mass
- Initially align centers of mass rather than centers of bounding boxes.
- --init-scales
- Initialize scale factors using first-order moments
- --center-template
- Center aligned images in template grid field of view.
- --outputtype
- Scalar data type for the output average image. Supported values: "char", "byte", "short", "ushort", "int", "uint", "float", "double", where the default is "float", or use one of the following:
AUTHORS
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, Daniel B. Russakoff, and Yaroslav Halchenko
LICENSE
http://www.fsf.org/licensing/licenses/gpl.html
BUGS
Report bugs at http://nitrc.org/projects/cmtk/
ACKNOWLEDGMENTS
CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium on Alcohol and Neurodevelopment in Adolescence (N-CANDA): Data Integration Component. From April 2009 through September 2011, CMTK development and maintenance was supported by the NIBIB under Grant EB008381.
| Feb 26 2025 | CMTK 3.3.1p2 |