Man page - cmtk-lmsba(1)
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apt-get install cmtk
Manual
lmsba
NAMESYNOPSIS
DESCRIPTION
OPTIONS
Global Toolkit Options (these are shared by all CMTK tools)
Input Options
Label Combination Options
Output Options
AUTHORS
LICENSE
BUGS
ACKNOWLEDGMENTS
NAME
lmsba - Local voting.
SYNOPSIS
lsba [options] targetImage atlasIntensity1 atlasLabels1 [atlasIntensity2 atlasLabels2 [...]]
DESCRIPTION
This tool combines multiple multi-class segmentations from co-registered and reformatted atlases using locally-weighted Shape-Based Averaging.
OPTIONS
Global Toolkit Options (these are shared by all CMTK tools)
--help
Write list of basic command line options to standard output.
--help-all
Write complete list of basic and advanced command line options to standard output.
--wiki
Write list of command line options to standard output in MediaWiki markup.
--man
Write man page source in ’nroff’ markup to standard output.
--version
Write toolkit version to standard output.
--echo
Write the current command line to standard output.
--verbose-level <integer>
Set verbosity level.
--verbose , -v
Increment verbosity level by 1 (deprecated; supported for backward compatibility).
--threads <integer>
Set maximum number of parallel threads (for POSIX threads and OpenMP).
Input Options
--set-padding-value <double>
Set padding value for input intensity images. Pixels with this value will be ignored. [Default: disabled]
Label Combination Options
--patch-radius <none>
Radius of image patch (in pixels) used for local similarity computation. [Default: 5]
--search-radius <none>
Search radius for local image patch matching. The algorithm finds the best-matching patch within this radius by exhaustive search. [Default: 0]
--no-local-outliers
Detect and exclude local outliers in the Shape Based Averaging procedure.
--no-global-outliers
Detect and exclude global outliers by removing poorly correlated atlases prior to local SBA procedure.
Output Options
--output <string> , -o <string>
File system path for the output image. [Default: lsbo.nii ]
AUTHORS
Torsten Rohlfing, with contributions from Michael P. Hasak, Greg Jefferis, Calvin R. Maurer, Daniel B. Russakoff, and Yaroslav Halchenko
LICENSE
http://www.fsf.org/licensing/licenses/gpl.html
BUGS
Report bugs at http://nitrc.org/projects/cmtk/
ACKNOWLEDGMENTS
CMTK is developed with support from the NIAAA under Grant AA021697, National Consortium on Alcohol and Neurodevelopment in Adolescence (N-CANDA): Data Integration Component. From April 2009 through September 2011, CMTK development and maintenance was supported by the NIBIB under Grant EB008381.