Package - fastaq

Package: fastaq
apt-get install fastaq

Manuals in package:

Documentations in package:

fastaq

Primary informations

Download package: http://deb.debian.org/debian/pool/main/f/fastaq/fastaq_3.17.0-9_all.deb (Size: 46.7KiB)

Property	Value
Package	fastaq
Version	3.17.0-9
Installed-Size	195
Maintainer	Debian Med Packaging Team
Architecture	all
Depends	python3:any, samtools
Description	FASTA and FASTQ file manipulation tools
Description-md5	87737379b65cd806e7ab8b37901b7e08
Homepage	https://github.com/sanger-pathogens/Fastaq
Tag	biology::format:fasta, biology::nucleic-acids, field::biology, field::biology:bioinformatics, implemented-in::python, interface::commandline, role::program, scope::utility, use::analysing, use::calculating, use::checking, use::converting, use::filtering, works-with::biological-sequence
Section	science
Priority	optional
Filename	pool/main/f/fastaq/fastaq_3.17.0-9_all.deb
Size	47808
MD5sum	b41370718ca61314bf18249dad386b8b
SHA256	2cf650da943f66f65ef8bdb554436c9d73d10f5b9263246ce2ff8a9f799d2c31

Files in package

/usr/bin/fastaq
/usr/lib/python3/dist-packages/pyfastaq-3.17.0.egg-info/PKG-INFO
/usr/lib/python3/dist-packages/pyfastaq-3.17.0.egg-info/dependency_links.txt
/usr/lib/python3/dist-packages/pyfastaq-3.17.0.egg-info/top_level.txt
/usr/lib/python3/dist-packages/pyfastaq/__init__.py
/usr/lib/python3/dist-packages/pyfastaq/caf.py
/usr/lib/python3/dist-packages/pyfastaq/genetic_codes.py
/usr/lib/python3/dist-packages/pyfastaq/intervals.py
/usr/lib/python3/dist-packages/pyfastaq/runners/__init__.py
/usr/lib/python3/dist-packages/pyfastaq/runners/acgtn_only.py
/usr/lib/python3/dist-packages/pyfastaq/runners/add_indels.py
/usr/lib/python3/dist-packages/pyfastaq/runners/caf_to_fastq.py
/usr/lib/python3/dist-packages/pyfastaq/runners/capillary_to_pairs.py
/usr/lib/python3/dist-packages/pyfastaq/runners/chunker.py
/usr/lib/python3/dist-packages/pyfastaq/runners/count_sequences.py
/usr/lib/python3/dist-packages/pyfastaq/runners/deinterleave.py
/usr/lib/python3/dist-packages/pyfastaq/runners/enumerate_names.py
/usr/lib/python3/dist-packages/pyfastaq/runners/expand_nucleotides.py
/usr/lib/python3/dist-packages/pyfastaq/runners/fasta_to_fastq.py
/usr/lib/python3/dist-packages/pyfastaq/runners/filter.py
/usr/lib/python3/dist-packages/pyfastaq/runners/get_ids.py
/usr/lib/python3/dist-packages/pyfastaq/runners/get_seq_flanking_gaps.py
/usr/lib/python3/dist-packages/pyfastaq/runners/interleave.py
/usr/lib/python3/dist-packages/pyfastaq/runners/make_random_contigs.py
/usr/lib/python3/dist-packages/pyfastaq/runners/merge.py
/usr/lib/python3/dist-packages/pyfastaq/runners/replace_bases.py
/usr/lib/python3/dist-packages/pyfastaq/runners/reverse_complement.py
/usr/lib/python3/dist-packages/pyfastaq/runners/scaffolds_to_contigs.py
/usr/lib/python3/dist-packages/pyfastaq/runners/search_for_seq.py
/usr/lib/python3/dist-packages/pyfastaq/runners/sequence_trim.py
/usr/lib/python3/dist-packages/pyfastaq/runners/sort_by_name.py
/usr/lib/python3/dist-packages/pyfastaq/runners/sort_by_size.py
/usr/lib/python3/dist-packages/pyfastaq/runners/split_by_base_count.py
/usr/lib/python3/dist-packages/pyfastaq/runners/strip_illumina_suffix.py
/usr/lib/python3/dist-packages/pyfastaq/runners/to_boulderio.py
/usr/lib/python3/dist-packages/pyfastaq/runners/to_fake_qual.py
/usr/lib/python3/dist-packages/pyfastaq/runners/to_fasta.py
/usr/lib/python3/dist-packages/pyfastaq/runners/to_mira_xml.py
/usr/lib/python3/dist-packages/pyfastaq/runners/to_orfs_gff.py
/usr/lib/python3/dist-packages/pyfastaq/runners/to_perfect_reads.py
/usr/lib/python3/dist-packages/pyfastaq/runners/to_random_subset.py
/usr/lib/python3/dist-packages/pyfastaq/runners/to_tiling_bam.py
/usr/lib/python3/dist-packages/pyfastaq/runners/to_unique_by_id.py
/usr/lib/python3/dist-packages/pyfastaq/runners/translate.py
/usr/lib/python3/dist-packages/pyfastaq/runners/trim_Ns_at_end.py
/usr/lib/python3/dist-packages/pyfastaq/runners/trim_contigs.py
/usr/lib/python3/dist-packages/pyfastaq/runners/trim_ends.py
/usr/lib/python3/dist-packages/pyfastaq/runners/version.py
/usr/lib/python3/dist-packages/pyfastaq/sequences.py
/usr/lib/python3/dist-packages/pyfastaq/tasks.py
/usr/lib/python3/dist-packages/pyfastaq/utils.py
/usr/share/doc/fastaq/changelog.Debian.gz
/usr/share/doc/fastaq/copyright
/usr/share/man/man1/fastaq-acgtn_only.1.gz
/usr/share/man/man1/fastaq-add_indels.1.gz
/usr/share/man/man1/fastaq-caf_to_fastq.1.gz
/usr/share/man/man1/fastaq-capillary_to_pairs.1.gz
/usr/share/man/man1/fastaq-chunker.1.gz
/usr/share/man/man1/fastaq-count_sequences.1.gz
/usr/share/man/man1/fastaq-deinterleave.1.gz
/usr/share/man/man1/fastaq-enumerate_names.1.gz
/usr/share/man/man1/fastaq-expand_nucleotides.1.gz
/usr/share/man/man1/fastaq-fasta_to_fastq.1.gz
/usr/share/man/man1/fastaq-filter.1.gz
/usr/share/man/man1/fastaq-get_ids.1.gz
/usr/share/man/man1/fastaq-get_seq_flanking_gaps.1.gz
/usr/share/man/man1/fastaq-interleave.1.gz
/usr/share/man/man1/fastaq-make_random_contigs.1.gz
/usr/share/man/man1/fastaq-merge.1.gz
/usr/share/man/man1/fastaq-replace_bases.1.gz
/usr/share/man/man1/fastaq-reverse_complement.1.gz
/usr/share/man/man1/fastaq-scaffolds_to_contigs.1.gz
/usr/share/man/man1/fastaq-search_for_seq.1.gz
/usr/share/man/man1/fastaq-sequence_trim.1.gz
/usr/share/man/man1/fastaq-sort_by_name.1.gz
/usr/share/man/man1/fastaq-sort_by_size.1.gz
/usr/share/man/man1/fastaq-split_by_base_count.1.gz
/usr/share/man/man1/fastaq-strip_illumina_suffix.1.gz
/usr/share/man/man1/fastaq-to_boulderio.1.gz
/usr/share/man/man1/fastaq-to_fake_qual.1.gz
/usr/share/man/man1/fastaq-to_fasta.1.gz
/usr/share/man/man1/fastaq-to_mira_xml.1.gz
/usr/share/man/man1/fastaq-to_orfs_gff.1.gz
/usr/share/man/man1/fastaq-to_perfect_reads.1.gz
/usr/share/man/man1/fastaq-to_random_subset.1.gz
/usr/share/man/man1/fastaq-to_tiling_bam.1.gz
/usr/share/man/man1/fastaq-to_unique_by_id.1.gz
/usr/share/man/man1/fastaq-translate.1.gz
/usr/share/man/man1/fastaq-trim_Ns_at_end.1.gz
/usr/share/man/man1/fastaq-trim_contigs.1.gz
/usr/share/man/man1/fastaq-trim_ends.1.gz
/usr/share/man/man1/fastaq-version.1.gz
/usr/share/man/man1/fastaq.1.gz