Man page - fastaq-capillary_to_pairs(1)
Packages contains this manual
- fastaq-filter(1)
- fastaq-version(1)
- fastaq-fasta_to_fastq(1)
- fastaq-split_by_base_count(1)
- fastaq-to_fasta(1)
- fastaq-translate(1)
- fastaq-reverse_complement(1)
- fastaq-add_indels(1)
- fastaq-to_tiling_bam(1)
- fastaq-acgtn_only(1)
- fastaq-trim_ends(1)
- fastaq-to_orfs_gff(1)
- fastaq-get_ids(1)
- fastaq-to_perfect_reads(1)
- fastaq-trim_contigs(1)
- fastaq-scaffolds_to_contigs(1)
- fastaq-search_for_seq(1)
- fastaq-to_mira_xml(1)
- fastaq-to_random_subset(1)
- fastaq-to_fake_qual(1)
- fastaq-sort_by_size(1)
- fastaq-merge(1)
- fastaq-enumerate_names(1)
- fastaq-strip_illumina_suffix(1)
- fastaq-to_boulderio(1)
- fastaq-caf_to_fastq(1)
- fastaq-count_sequences(1)
- fastaq-interleave(1)
- fastaq-make_random_contigs(1)
- fastaq-to_unique_by_id(1)
- fastaq-deinterleave(1)
- fastaq-replace_bases(1)
- fastaq-capillary_to_pairs(1)
- fastaq-sequence_trim(1)
- fastaq-sort_by_name(1)
- fastaq-expand_nucleotides(1)
- fastaq-chunker(1)
- fastaq-get_seq_flanking_gaps(1)
- fastaq(1)
Package: fastaq
apt-get install fastaq
apt-get install fastaq
Manuals in package:
Documentations in package:
Manual
FASTAQ-CAPILLARY_TO_PAIRS
NAMEDESCRIPTION
positional arguments:
options:
NAME
fastaq_capillary_to_pairs - Converts file of capillary reads to paired and unpaired files
DESCRIPTION
usage: fastaq_capillary_to_pairs <infile> <outfiles prefix>
Given a file of capillary reads, makes an interleaved file of read pairs (where more than read from same ligation, takes the longest read) and a file of unpaired reads. Replaces the .p1k/.q1k part of read names to denote fwd/rev reads with /1 and /2
positional arguments:
|
infile |
Name of input fasta/q file |
outfiles prefix
Prefix of output files
options:
-h , --help
show this help message and exit