Man page - fastaq-capillary_to_pairs(1)
Packages contas this manual
- fastaq-merge(1)
- fastaq-to_unique_by_id(1)
- fastaq-split_by_base_count(1)
- fastaq-strip_illumina_suffix(1)
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- fastaq-translate(1)
- fastaq-make_random_contigs(1)
- fastaq-chunker(1)
- fastaq-to_mira_xml(1)
- fastaq-to_perfect_reads(1)
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- fastaq-caf_to_fastq(1)
- fastaq-sort_by_name(1)
- fastaq-interleave(1)
- fastaq-sort_by_size(1)
- fastaq-search_for_seq(1)
- fastaq-capillary_to_pairs(1)
- fastaq-to_fasta(1)
- fastaq-to_orfs_gff(1)
- fastaq-trim_ends(1)
- fastaq-replace_bases(1)
- fastaq-to_tiling_bam(1)
Package: fastaq
apt-get install fastaq
apt-get install fastaq
Manuals in package:
Documentations in package:
Manual
| FASTAQ-CAPILLARY_TO_PAIRS(1) | User Commands | FASTAQ-CAPILLARY_TO_PAIRS(1) |
NAME
fastaq_capillary_to_pairs - Converts file of capillary reads to paired and unpaired files
DESCRIPTION
usage: fastaq_capillary_to_pairs <infile> <outfiles prefix>
Given a file of capillary reads, makes an interleaved file of read pairs (where more than read from same ligation, takes the longest read) and a file of unpaired reads. Replaces the .p1k/.q1k part of read names to denote fwd/rev reads with /1 and /2
positional arguments:
- infile
- Name of input fasta/q file
- outfiles prefix
- Prefix of output files
options:
- -h, --help
- show this help message and exit
| December 2024 | fastaq_capillary_to_pairs 3.17.0 |