Man page - fastaq-replace_bases(1)

Packages contains this manual

Package:  fastaq
apt-get install fastaq

Manuals in package:
• fastaq-filter(1)
• fastaq-version(1)
• fastaq-fasta_to_fastq(1)
• fastaq-split_by_base_count(1)
• fastaq-to_fasta(1)
• fastaq-translate(1)
• fastaq-reverse_complement(1)
• fastaq-add_indels(1)
• fastaq-to_tiling_bam(1)
• fastaq-acgtn_only(1)
• fastaq-trim_ends(1)
• fastaq-to_orfs_gff(1)
• fastaq-get_ids(1)
• fastaq-to_perfect_reads(1)
• fastaq-trim_contigs(1)
• fastaq-scaffolds_to_contigs(1)
• fastaq-search_for_seq(1)
• fastaq-to_mira_xml(1)
• fastaq-to_random_subset(1)
• fastaq-to_fake_qual(1)
• fastaq-sort_by_size(1)
• fastaq-merge(1)
• fastaq-enumerate_names(1)
• fastaq-strip_illumina_suffix(1)
• fastaq-to_boulderio(1)
• fastaq-caf_to_fastq(1)
• fastaq-count_sequences(1)
• fastaq-interleave(1)
• fastaq-make_random_contigs(1)
• fastaq-to_unique_by_id(1)
• fastaq-deinterleave(1)
• fastaq-replace_bases(1)
• fastaq-capillary_to_pairs(1)
• fastaq-sequence_trim(1)
• fastaq-sort_by_name(1)
• fastaq-expand_nucleotides(1)
• fastaq-chunker(1)
• fastaq-get_seq_flanking_gaps(1)
• fastaq(1)
Documentations in package:
• fastaq

Manual

FASTAQ-REPLACE_BASES

NAME
DESCRIPTION
positional arguments:
options:

---

NAME

fastaq_replace_bases - Replaces all occurrences of one letter with another

DESCRIPTION

usage: fastaq_replace_bases <infile> <outfile> <old> <new>

Replaces all occurrences of one letter with another

positional arguments:

infile

Name of input file

outfile

Name of output file

	old		Base to be replaced
	new		Replace with this letter

options:

-h , --help

show this help message and exit

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