Man page - fastaq-to_perfect_reads(1)
Packages contas this manual
- fastaq-merge(1)
- fastaq-to_unique_by_id(1)
- fastaq-split_by_base_count(1)
- fastaq-strip_illumina_suffix(1)
- fastaq-get_ids(1)
- fastaq-enumerate_names(1)
- fastaq-count_sequences(1)
- fastaq-sequence_trim(1)
- fastaq-to_fake_qual(1)
- fastaq-filter(1)
- fastaq-fasta_to_fastq(1)
- fastaq-version(1)
- fastaq-trim_contigs(1)
- fastaq(1)
- fastaq-deinterleave(1)
- fastaq-add_indels(1)
- fastaq-get_seq_flanking_gaps(1)
- fastaq-expand_nucleotides(1)
- fastaq-scaffolds_to_contigs(1)
- fastaq-to_boulderio(1)
- fastaq-to_random_subset(1)
- fastaq-translate(1)
- fastaq-make_random_contigs(1)
- fastaq-chunker(1)
- fastaq-to_mira_xml(1)
- fastaq-to_perfect_reads(1)
- fastaq-acgtn_only(1)
- fastaq-reverse_complement(1)
- fastaq-caf_to_fastq(1)
- fastaq-sort_by_name(1)
- fastaq-interleave(1)
- fastaq-sort_by_size(1)
- fastaq-search_for_seq(1)
- fastaq-capillary_to_pairs(1)
- fastaq-to_fasta(1)
- fastaq-to_orfs_gff(1)
- fastaq-trim_ends(1)
- fastaq-replace_bases(1)
- fastaq-to_tiling_bam(1)
Package: fastaq
apt-get install fastaq
apt-get install fastaq
Manuals in package:
Documentations in package:
Manual
| FASTAQ-TO_PERFECT_READS(1) | User Commands | FASTAQ-TO_PERFECT_READS(1) |
NAME
fastaq_to_perfect_reads - Make perfect paired reads from reference
DESCRIPTION
usage: fastaq_to_perfect_reads [options] <infile> <outfile> <mean insert size> <insert std deviation> <mean coverage> <read length>
Makes perfect paired end fastq reads from a sequence file, with insert sizes sampled from a normal distribution. Read orientation is innies. Output is an interleaved FASTQ file.
positional arguments:
- infile
- Name of input file
- outfile
- Name of output file
- mean insert size
- Mean insert size of read pairs
- insert std deviation
- Standard devation of insert size
- mean coverage
- Mean coverage of the reads
- read length
- Length of each read
options:
- -h, --help
- show this help message and exit
- --fragments FILENAME
- Write FASTA sequences of fragments (i.e. read pairs plus sequences in between them) to the given filename
- --no_n
- Don't allow any N or n characters in the reads
- --seed INT
- Seed for random number generator. Default is to use python's default
| December 2024 | fastaq_to_perfect_reads 3.17.0 |