Man page - fastaq-add_indels(1)
Packages contains this manual
- fastaq-filter(1)
- fastaq-version(1)
- fastaq-fasta_to_fastq(1)
- fastaq-split_by_base_count(1)
- fastaq-to_fasta(1)
- fastaq-translate(1)
- fastaq-reverse_complement(1)
- fastaq-add_indels(1)
- fastaq-to_tiling_bam(1)
- fastaq-acgtn_only(1)
- fastaq-trim_ends(1)
- fastaq-to_orfs_gff(1)
- fastaq-get_ids(1)
- fastaq-to_perfect_reads(1)
- fastaq-trim_contigs(1)
- fastaq-scaffolds_to_contigs(1)
- fastaq-search_for_seq(1)
- fastaq-to_mira_xml(1)
- fastaq-to_random_subset(1)
- fastaq-to_fake_qual(1)
- fastaq-sort_by_size(1)
- fastaq-merge(1)
- fastaq-enumerate_names(1)
- fastaq-strip_illumina_suffix(1)
- fastaq-to_boulderio(1)
- fastaq-caf_to_fastq(1)
- fastaq-count_sequences(1)
- fastaq-interleave(1)
- fastaq-make_random_contigs(1)
- fastaq-to_unique_by_id(1)
- fastaq-deinterleave(1)
- fastaq-replace_bases(1)
- fastaq-capillary_to_pairs(1)
- fastaq-sequence_trim(1)
- fastaq-sort_by_name(1)
- fastaq-expand_nucleotides(1)
- fastaq-chunker(1)
- fastaq-get_seq_flanking_gaps(1)
- fastaq(1)
apt-get install fastaq
Manual
FASTAQ-ADD_INDELS
NAMEDESCRIPTION
positional arguments:
options:
NAME
fastaq_add_indels - Deletes or inserts bases at given position(s)
DESCRIPTION
usage: fastaq_add_indels [options] <infile> <outfile>
Deletes or inserts bases at given position(s)
positional arguments:
|
infile |
Name of input file |
outfile
Name of output file
options:
-h , --help
show this help message and exit
-d Name:start:bases, --delete Name:start:bases
Delete the given bases from the given sequence. Format same as samtools view: name:start-end. This option can be used multiple times (once for each region to delete). Overlapping coords will be merged before deleting
--delete_range P,start,step
Deletes bases starting at position P in each sequence of the input file. Deletes start + (n-1)*step bases from sequence n.
-i Name:start:bases, --insert Name:start:bases
Insert a random string of bases at the given position. Format is name:position:number_to_add. Bases are added after the position. This option can be used multiple times
--insert_range P,start,step
Inserts random bases starting after position P in each sequence of the input file. Inserts start + (n-1)*step bases into sequence n.