Package - cct

Package: cct
apt-get install cct

Manuals in package:

Documentations in package:

Primary informations

Download package: http://deb.debian.org/debian/pool/main/c/cct/cct_1.0.3-1_all.deb (Size: 34.6MiB)

Property	Value
Package	cct
Version	1:1.0.3-1
Installed-Size	35963
Maintainer	Debian Med Packaging Team
Architecture	all
Depends	perl:any, bioperl, cgview, ncbi-blast+-legacy, imagemagick \| graphicsmagick, liberror-perl, libtie-ixhash-perl, libwww-perl
Description	visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences
Description-md5	0ab3a35909def68fd30bc34fe539c2b2
Homepage	http://stothard.afns.ualberta.ca/downloads/CCT/
Section	science
Priority	optional
Filename	pool/main/c/cct/cct_1.0.3-1_all.deb
Size	36332512
MD5sum	410dede1968d229a3216b7908e94a50f
SHA256	24256b211d59279b897555cd867a771fe9c82f059269dd18719648cc41849941

Files in package

/etc/cct/global_settings.conf
/etc/cct/project_settings.conf
/etc/cct/project_settings_cds_vs_cds.conf
/etc/cct/project_settings_dna_vs_dna.conf
/etc/cct/project_settings_multi.conf
/usr/bin/build_blast_atlas
/usr/bin/build_blast_atlas_all_vs_all
/usr/bin/build_cog_db
/usr/bin/cgview_comparison_tool
/usr/bin/check_env
/usr/bin/convert_vcf_to_features
/usr/bin/create_zoomed_maps
/usr/bin/fetch_all_refseq_bacterial_genomes
/usr/bin/fetch_all_refseq_chloroplast_genomes
/usr/bin/fetch_all_refseq_mitochondrial_genomes
/usr/bin/fetch_genome_by_accession
/usr/bin/fetch_refseq_bacterial_genomes_by_name
/usr/bin/ncbi_search
/usr/bin/process_sample_projects
/usr/bin/process_test_projects
/usr/bin/redraw_maps
/usr/bin/remove_long_seqs
/usr/bin/remove_short_seqs
/usr/share/cct/conf
/usr/share/cct/lib/scripts/assign_cogs/README.md
/usr/share/cct/lib/scripts/assign_cogs/assign_cogs.pl
/usr/share/cct/lib/scripts/assign_cogs/db/myva.gz
/usr/share/cct/lib/scripts/assign_cogs/db/whog.gz
/usr/share/cct/lib/scripts/assign_cogs/test.sh
/usr/share/cct/lib/scripts/cgview_xml_builder/README.md
/usr/share/cct/lib/scripts/cgview_xml_builder/cgview_xml_builder.pl
/usr/share/cct/lib/scripts/cgview_xml_builder/test.sh
/usr/share/cct/lib/scripts/convert_vcf_to_features/README.md
/usr/share/cct/lib/scripts/convert_vcf_to_features/convert_vcf_to_features.pl
/usr/share/cct/lib/scripts/convert_vcf_to_features/test.sh
/usr/share/cct/lib/scripts/get_cds/README.md
/usr/share/cct/lib/scripts/get_cds/get_cds.pl
/usr/share/cct/lib/scripts/get_cds/test.sh
/usr/share/cct/lib/scripts/get_orfs/README.md
/usr/share/cct/lib/scripts/get_orfs/get_orfs.pl
/usr/share/cct/lib/scripts/get_orfs/test.sh
/usr/share/cct/lib/scripts/local_blast_client/README.md
/usr/share/cct/lib/scripts/local_blast_client/local_blast_client.pl
/usr/share/cct/lib/scripts/local_blast_client/test.sh
/usr/share/cct/lib/scripts/ncbi_search/README.md
/usr/share/cct/lib/scripts/ncbi_search/ncbi_search.pl
/usr/share/cct/lib/scripts/ncbi_search/test.sh
/usr/share/cct/lib/scripts/sequence_to_multi_fasta/README.md
/usr/share/cct/lib/scripts/sequence_to_multi_fasta/sequence_to_multi_fasta.pl
/usr/share/cct/lib/scripts/sequence_to_multi_fasta/test.sh
/usr/share/cct/scripts/build_blast_atlas.sh
/usr/share/cct/scripts/build_blast_atlas_all_vs_all.sh
/usr/share/cct/scripts/build_cog_db.sh
/usr/share/cct/scripts/cgview_comparison_tool.pl
/usr/share/cct/scripts/check_env.sh
/usr/share/cct/scripts/convert_vcf_to_features.pl
/usr/share/cct/scripts/create_zoomed_maps.sh
/usr/share/cct/scripts/fetch_all_refseq_bacterial_genomes.sh
/usr/share/cct/scripts/fetch_all_refseq_chloroplast_genomes.sh
/usr/share/cct/scripts/fetch_all_refseq_mitochondrial_genomes.sh
/usr/share/cct/scripts/fetch_genome_by_accession.sh
/usr/share/cct/scripts/fetch_refseq_bacterial_genomes_by_name.sh
/usr/share/cct/scripts/generic
/usr/share/cct/scripts/ncbi_search.pl
/usr/share/cct/scripts/process_sample_projects.sh
/usr/share/cct/scripts/process_test_projects.sh
/usr/share/cct/scripts/redraw_maps.sh
/usr/share/cct/scripts/remove_long_seqs.sh
/usr/share/cct/scripts/remove_short_seqs.sh
/usr/share/doc/cct/README.Debian
/usr/share/doc/cct/README.md.gz
/usr/share/doc/cct/README.test
/usr/share/doc/cct/changelog.Debian.gz
/usr/share/doc/cct/copyright
/usr/share/man/man1/build_blast_atlas.1.gz
/usr/share/man/man1/build_blast_atlas_all_vs_all.1.gz
/usr/share/man/man1/cgview_comparison_tool.1.gz
/usr/share/man/man1/convert_vcf_to_features.1.gz
/usr/share/man/man1/create_zoomed_maps.1.gz
/usr/share/man/man1/fetch_all_refseq_bacterial_genomes.1.gz
/usr/share/man/man1/fetch_all_refseq_chloroplast_genomes.1.gz
/usr/share/man/man1/fetch_all_refseq_mitochondrial_genomes.1.gz
/usr/share/man/man1/fetch_genome_by_accession.1.gz
/usr/share/man/man1/fetch_refseq_bacterial_genomes_by_name.1.gz
/usr/share/man/man1/ncbi_search.1.gz
/usr/share/man/man1/redraw_maps.1.gz
/usr/share/man/man1/remove_long_seqs.1.gz
/usr/share/man/man1/remove_short_seqs.1.gz
/usr/share/perl5/Util/Configurator.pm
/usr/share/perl5/Util/LogManager.pm