Man page - fetch_all_refseq_bacterial_genomes(1)
Packages contas this manual
- fetch_refseq_bacterial_genomes_by_name(1)
- fetch_genome_by_accession(1)
- ncbi_search(1)
- fetch_all_refseq_chloroplast_genomes(1)
- build_blast_atlas(1)
- fetch_all_refseq_mitochondrial_genomes(1)
- build_blast_atlas_all_vs_all(1)
- remove_long_seqs(1)
- cgview_comparison_tool(1)
- remove_short_seqs(1)
- create_zoomed_maps(1)
- redraw_maps(1)
- fetch_all_refseq_bacterial_genomes(1)
- convert_vcf_to_features(1)
Package: cct
apt-get install cct
apt-get install cct
Manuals in package:
Documentations in package:
Manual
| FETCH_ALL_REFSEQ_BACTERIAL_GENOMES(1) | User Commands | FETCH_ALL_REFSEQ_BACTERIAL_GENOMES(1) |
NAME
fetch_all_refseq_bacterial_genomes - visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences
DESCRIPTION
USAGE:
- fetch_all_refseq_bacterial_genomes -o DIR
DESCRIPTION:
- Downloads all bacterial RefSeq sequences form NCBI in GenBank format. The --min and --max options can be used to restrict the size of the returned sequences.
REQUIRED ARGUMENTS:
-o, --output DIR
- The output directory to contain the downloaded GenBank files.
OPTIONAL ARGUMENTS:
-m, --min INTEGER
- Records with a sequence length shorter than this value will be ignored.
-x, --max INTEGER
- Records with a sequence length longer than this value will be ignored.
-h, --help
- Show this message.
EXAMPLE:
- fetch_all_refseq_bacterial_genomes -o my_project/comparison_genomes
AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.
| August 2018 | fetch_all_refseq_bacterial_genomes 20170919 |