Man page - convert_vcf_to_features(1)
Packages contas this manual
- fetch_refseq_bacterial_genomes_by_name(1)
- fetch_genome_by_accession(1)
- ncbi_search(1)
- fetch_all_refseq_chloroplast_genomes(1)
- build_blast_atlas(1)
- fetch_all_refseq_mitochondrial_genomes(1)
- build_blast_atlas_all_vs_all(1)
- remove_long_seqs(1)
- cgview_comparison_tool(1)
- remove_short_seqs(1)
- create_zoomed_maps(1)
- redraw_maps(1)
- fetch_all_refseq_bacterial_genomes(1)
- convert_vcf_to_features(1)
Package: cct
apt-get install cct
apt-get install cct
Manuals in package:
Documentations in package:
Manual
| CONVERT_VCF_TO_FEATURES(1) | User Commands | CONVERT_VCF_TO_FEATURES(1) |
NAME
convert_vcf_to_features - visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences
DESCRIPTION
Unknown option: help 1
USAGE:
- convert_vcf_to_features -i INFILE -o OUTFILE
DESCRIPTION:
- This script converts a VCF (Variant Call Format) file into a feature file (GFF). The resulting GFF file can be used by the CGview Comparison tool. Simply place the GFF file in the 'features' directory of a CCT project.
REQUIRED ARGUMENTS:
-i, --input FILE
- Input VCF file (tab deliminated).
-o, --output FILE
- Name to call the output file.
EXAMPLE:
- convert_vcf_to_features -i input.vcf -o output.gff
AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.
| August 2018 | convert_vcf_to_features 20170919 |