Man page - convert_vcf_to_features(1)

Packages contains this manual

Package:  cct
apt-get install cct

Manuals in package:
• create_zoomed_maps(1)
• redraw_maps(1)
• build_blast_atlas(1)
• remove_long_seqs(1)
• fetch_refseq_bacterial_genomes_by_name(1)
• convert_vcf_to_features(1)
• remove_short_seqs(1)
• build_blast_atlas_all_vs_all(1)
• fetch_all_refseq_mitochondrial_genomes(1)
• fetch_all_refseq_chloroplast_genomes(1)
• ncbi_search(1)
• fetch_genome_by_accession(1)
• fetch_all_refseq_bacterial_genomes(1)
• cgview_comparison_tool(1)
Documentations in package:
• cct

Manual

CONVERT_VCF_TO_FEATURES

NAME
DESCRIPTION
USAGE:
DESCRIPTION:
REQUIRED ARGUMENTS:
EXAMPLE:
AUTHOR

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NAME

convert_vcf_to_features - visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences

DESCRIPTION

Unknown option: help 1

USAGE:

convert_vcf_to_features -i INFILE -o OUTFILE

DESCRIPTION:

This script converts a VCF (Variant Call Format) file into a feature file (GFF). The resulting GFF file can be used by the CGview Comparison tool. Simply place the GFF file in the ’features’ directory of a CCT project.

REQUIRED ARGUMENTS:

-i , --input FILE

Input VCF file (tab deliminated).

-o , --output FILE

Name to call the output file.

EXAMPLE:

convert_vcf_to_features -i input.vcf -o output.gff

AUTHOR

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.

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