Man page - remove_short_seqs(1)

Packages contains this manual

Package:  cct
apt-get install cct

Manuals in package:
• create_zoomed_maps(1)
• redraw_maps(1)
• build_blast_atlas(1)
• remove_long_seqs(1)
• fetch_refseq_bacterial_genomes_by_name(1)
• convert_vcf_to_features(1)
• remove_short_seqs(1)
• build_blast_atlas_all_vs_all(1)
• fetch_all_refseq_mitochondrial_genomes(1)
• fetch_all_refseq_chloroplast_genomes(1)
• ncbi_search(1)
• fetch_genome_by_accession(1)
• fetch_all_refseq_bacterial_genomes(1)
• cgview_comparison_tool(1)
Documentations in package:
• cct

Manual

REMOVE_SHORT_SEQS

NAME
DESCRIPTION
USAGE:
DESCRIPTION:
REQUIRED ARGUMENTS:
OPTIONAL ARGUMENTS:
EXAMPLE:
AUTHOR

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NAME

remove_short_seqs - visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences

DESCRIPTION

usage: remove_short_seqs [[-i input] [-l length] | [-h]] -i DIRECTORY the input directory of GenBank files with .gbk extensions -l INTEGER remove GenBank files that describe sequences shorter than this length

USAGE:

remove_short_seqs -i DIR -l INTEGER

DESCRIPTION:

Removes GenBank files that are shorter than the specified length from the provided directory.

REQUIRED ARGUMENTS:

-i , --input DIR

Input directory of GenBank files with .gbk extensions.

-l , --length INTEGER

Remove GenBank files that describe sequences shorter than this length.

OPTIONAL ARGUMENTS:

	-h , --help

Show this message

EXAMPLE:

remove_short_seqs -i my_project/comparison_genomes -l 100000

AUTHOR

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.

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