Man page - create_zoomed_maps(1)
Packages contas this manual
- fetch_refseq_bacterial_genomes_by_name(1)
- fetch_genome_by_accession(1)
- ncbi_search(1)
- fetch_all_refseq_chloroplast_genomes(1)
- build_blast_atlas(1)
- fetch_all_refseq_mitochondrial_genomes(1)
- build_blast_atlas_all_vs_all(1)
- remove_long_seqs(1)
- cgview_comparison_tool(1)
- remove_short_seqs(1)
- create_zoomed_maps(1)
- redraw_maps(1)
- fetch_all_refseq_bacterial_genomes(1)
- convert_vcf_to_features(1)
Package: cct
apt-get install cct
apt-get install cct
Manuals in package:
Documentations in package:
Manual
| CREATE_ZOOMED_MAPS(1) | User Commands | CREATE_ZOOMED_MAPS(1) |
NAME
create_zoomed_maps - visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences
DESCRIPTION
USAGE:
- create_zoomed_maps -p DIR -c INTEGER -z INTEGER [Options]
DESCRIPTION:
- Creates a zoomed map for completed CCT project.
REQUIRED ARGUMENTS:
-p, --project DIR
- Path to a completed CCT project.
-c, --center INTEGER
- Nucleotide position to center the zoomed map on.
-z, --zoom INTEGER
- Zoom multiplier.
OPTIONAL ARGUMENTS:
-f, --format STRING
- Image format for output map. Options are png, jpg, svg, svgz. (Default: png)
-m, --memory STRING
- Memory value for Java's -Xmx option (Default: 1500m).
-h, --help
- Show this message
EXAMPLE:
- create_zoomed_maps -p my_project -c 10000 -z 10 -format svg
AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.
| August 2018 | create_zoomed_maps 20170919 |