Man page - create_zoomed_maps(1)

Packages contains this manual

Package:  cct
apt-get install cct

Manuals in package:
• create_zoomed_maps(1)
• redraw_maps(1)
• build_blast_atlas(1)
• remove_long_seqs(1)
• fetch_refseq_bacterial_genomes_by_name(1)
• convert_vcf_to_features(1)
• remove_short_seqs(1)
• build_blast_atlas_all_vs_all(1)
• fetch_all_refseq_mitochondrial_genomes(1)
• fetch_all_refseq_chloroplast_genomes(1)
• ncbi_search(1)
• fetch_genome_by_accession(1)
• fetch_all_refseq_bacterial_genomes(1)
• cgview_comparison_tool(1)
Documentations in package:
• cct

Manual

CREATE_ZOOMED_MAPS

NAME
DESCRIPTION
USAGE:
DESCRIPTION:
REQUIRED ARGUMENTS:
OPTIONAL ARGUMENTS:
EXAMPLE:
AUTHOR

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NAME

create_zoomed_maps - visually comparing bacterial, plasmid, chloroplast, or mitochondrial sequences

DESCRIPTION

USAGE:

create_zoomed_maps -p DIR -c INTEGER -z INTEGER [Options]

DESCRIPTION:

Creates a zoomed map for completed CCT project.

REQUIRED ARGUMENTS:

-p , --project DIR

Path to a completed CCT project.

-c , --center INTEGER

Nucleotide position to center the zoomed map on.

-z , --zoom INTEGER

Zoom multiplier.

OPTIONAL ARGUMENTS:

	-f , --format STRING

Image format for output map. Options are png, jpg, svg, svgz. (Default: png)

-m , --memory STRING

Memory value for Java’s -Xmx option (Default: 1500m).

-h , --help

Show this message

EXAMPLE:

create_zoomed_maps -p my_project -c 10000 -z 10 -format svg

AUTHOR

This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.

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