Man page - yara_indexer(1)
Packages contas this manual
- rabema_build_gold_standard(1)
- razers3(1)
- alf(1)
- stellar(1)
- rabema_evaluate(1)
- insegt(1)
- tree_recon(1)
- sak(1)
- rabema_prepare_sam(1)
- mason_materializer(1)
- yara_mapper(1)
- gustaf(1)
- mason_frag_sequencing(1)
- yara_indexer(1)
- mason_methylation(1)
- splazers(1)
- micro_razers(1)
- snp_store(1)
- mason_genome(1)
- seqan_tcoffee(1)
- pair_align(1)
- razers(1)
Package: seqan-apps
apt-get install seqan-apps
apt-get install seqan-apps
Manuals in package:
Documentations in package:
Manual
| YARA_INDEXER(1) | YARA_INDEXER(1) |
NAME
yara_indexer - Yara Indexer
SYNOPSIS
yara_indexer [OPTIONS] <REFERENCE FILE>
DESCRIPTION
Yara - Yet Another Read Aligner.
See http://www.seqan.de/projects/yara for more information.
(c) Copyright 2011-2014 by Enrico Siragusa.
(c) Copyright 2013 by NVIDIA Corporation.
REQUIRED ARGUMENTS
- REFERENCE_FILE INPUT_FILE
- A reference genome file. Valid filetypes are: .sam[.*], .raw[.*], .gbk[.*], .frn[.*], .fq[.*], .fna[.*], .ffn[.*], .fastq[.*], .fasta[.*], .faa[.*], .fa[.*], .embl[.*], and .bam, where * is any of the following extensions: gz, bz2, and bgzf for transparent (de)compression.
OPTIONS
- -h, --help
- Display the help message.
- --version
- Display version information.
- -v, --verbose
- Displays verbose output.
Output Options:
- -o, --output-prefix OUTPUT_PREFIX
- Specify a filename prefix for the reference genome index. Default: use the filename prefix of the reference genome.
- -td, --tmp-dir STRING
- Specify a temporary directory where to construct the index. Default: use the output directory.
| yara_indexer 0.9.11 [tarball] |