Man page - rabema_prepare_sam(1)

Packages contains this manual

Package:  seqan-apps
apt-get install seqan-apps

Manuals in package:
• rabema_evaluate(1)
• alf(1)
• mason_materializer(1)
• pair_align(1)
• gustaf(1)
• stellar(1)
• razers3(1)
• sak(1)
• yara_indexer(1)
• mason_frag_sequencing(1)
• micro_razers(1)
• rabema_prepare_sam(1)
• insegt(1)
• rabema_build_gold_standard(1)
• splazers(1)
• seqan_tcoffee(1)
• yara_mapper(1)
• tree_recon(1)
• mason_genome(1)
• mason_methylation(1)
• razers(1)
• snp_store(1)
Documentations in package:
• seqan-apps

Manual

RABEMA_PREPARE_SAM

NAME
SYNOPSIS
DESCRIPTION
OPTIONS

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NAME

rabema_prepare_sam - Prepare SAM For Rabema

SYNOPSIS

rabema_prepare_sam -i IN.sam -o OUT.sam

DESCRIPTION

Prepare SAM file for usage with RABEMA.

OPTIONS

-h , --help

Display the help message.

--version

Display version information.

-i , --in-file INPUT_FILE

Path to the input file. Valid filetype is: .sam .

-o , --out-file OUTPUT_FILE

Path to the output file. Valid filetype is: .sam .

--dont-check-sorting

Do not check sortedness.

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