Man page - tree_recon(1)
Packages contas this manual
- rabema_build_gold_standard(1)
- razers3(1)
- alf(1)
- stellar(1)
- rabema_evaluate(1)
- insegt(1)
- tree_recon(1)
- sak(1)
- rabema_prepare_sam(1)
- mason_materializer(1)
- yara_mapper(1)
- gustaf(1)
- mason_frag_sequencing(1)
- yara_indexer(1)
- mason_methylation(1)
- splazers(1)
- micro_razers(1)
- snp_store(1)
- mason_genome(1)
- seqan_tcoffee(1)
- pair_align(1)
- razers(1)
Package: seqan-apps
apt-get install seqan-apps
apt-get install seqan-apps
Manuals in package:
Documentations in package:
Manual
| TREE_RECON(1) | TREE_RECON(1) |
NAME
tree_recon - Tree reconstruction
SYNOPSIS
tree_recon [OPTIONS] -m IN.DIST
DESCRIPTION
Reconstruct phylogenetic tree from Phylip matrix IN.DIST.
OPTIONS
- -h, --help
- Display the help message.
- --version
- Display version information.
Input / Output:
- -m, --matrix INPUT_FILE
- Name Phylip distance matrix file. Must contain at least three species. Valid filetype is: .dist.
- -o, --out-file OUTPUT_FILE
- Path to write output to. Valid filetypes are: .newick and .dot. Default: tree.dot.
Algorithm Options:
- -b, --build STRING
- Tree building method. nj: neighbour-joining, min: UPGMA single linkage, max: UPGMA complete linkage, avg: UPGMA average linkage, wavg: UPGMA weighted average linkage. Neighbour-joining creates an unrooted tree. We root that tree at the least joined pair. One of nj, min, max, avg, and wavg. Default: nj.
CONTACT AND REFERENCES
- For questions or comments, contact:
- Tobias Rausch <rausch@embl.de>
- SeqAn Homepage:
- http://www.seqan.de
| tree_recon 1.4.8 [tarball] |