Man page - mason_genome(1)
Packages contains this manual
- rabema_evaluate(1)
- alf(1)
- mason_materializer(1)
- pair_align(1)
- gustaf(1)
- stellar(1)
- razers3(1)
- sak(1)
- yara_indexer(1)
- mason_frag_sequencing(1)
- micro_razers(1)
- rabema_prepare_sam(1)
- insegt(1)
- rabema_build_gold_standard(1)
- splazers(1)
- seqan_tcoffee(1)
- yara_mapper(1)
- tree_recon(1)
- mason_genome(1)
- mason_methylation(1)
- razers(1)
- snp_store(1)
apt-get install seqan-apps
Manual
MASON_GENOME
NAMESYNOPSIS
DESCRIPTION
OPTIONS
Simulation Configuration:
Output Options:
EXAMPLES
NAME
mason_genome - Random Genome Simulation
SYNOPSIS
mason_genome [ OPTIONS ] [ -l LEN ]+ -o OUT.fa
DESCRIPTION
Simulate a random genome to the output file. For each -l / --contig-length entry, a contig with the given length will be simulated.
OPTIONS
-h , --help
Display the help message.
--version
Display version information.
-q , --quiet
Set verbosity to a minimum.
-v , --verbose
Enable verbose output.
-vv , --very-verbose
Enable very verbose output.
Simulation Configuration:
-l , --contig-length List of INTEGER ’s
Length of the contig to simulate. Give one -l value for each contig to simulate. In range [1..inf].
-s , --seed INTEGER
The seed to use for the random number generator. Default: 0 .
Output Options:
-o , --out-file OUTPUT_FILE
Output file. Valid filetypes are: .sam[.*] , .raw[.*] , .frn[.*] , .fq[.*] , .fna[.*] , .ffn[.*] , .fastq[.*] , .fasta[.*] , .faa[.*] , .fa[.*] , and .bam , where * is any of the following extensions: gz , bz2 , and bgzf for transparent (de)compression.
EXAMPLES
mason_genome -l 1000 -l 4000 -o genome.fa
Simulate a genome with two contigs of lengths 1000 and 4000 and write it to genome.fa.