Man page - trna2sap(1)

Packages contains this manual

Package:  ncbi-tools-bin
apt-get install ncbi-tools-bin

Manuals in package:
• asn2ff(1)
• asn2gb(1)
• asntool(1)
• vecscreen(1)
• sortbyquote(1)
• trna2tbl(1)
• asn2xml(1)
• getpub(1)
• gil2bin(1)
• gene2xml(1)
• asn2all(1)
• checksub(1)
• subfuse(1)
• getmesh(1)
• taxblast(1)
• asn2asn(1)
• spidey(1)
• tbl2asn(1)
• asnval(1)
• asnmacro(1)
• idfetch(1)
• asndhuff(1)
• insdseqget(1)
• nps2gps(1)
• indexpub(1)
• findspl(1)
• asn2fsa(1)
• gbseqget(1)
• errhdr(1)
• asn2idx(1)
• trna2sap(1)
• cleanasn(1)
• asndisc(1)
• makeset(1)
• fa2htgs(1)
• debruijn(1)
Documentations in package:
• ncbi-tools-bin

Manual

TRNA2SAP

NAME
SYNOPSIS
DESCRIPTION
OPTIONS
AUTHOR
SEE ALSO

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NAME

trna2sap - convert tRNAscan-SE output to an ASN.1 Seq-annot object

SYNOPSIS

trna2sap [ - ] [ -a ] [ -c str ] [ -f str ] [ -i filename ] [ -j ] [ -m str ] [ -n str ] [ -o filename ] [ -p dir ] [ -r dir ] [ -s ] [ -t str ] [ -u ] [ -x str ]

DESCRIPTION

trna2sap reads a text file produced by tRNAscan-SE and produces a corresponding ASN.1 Seq-annot in the format understood by other NCBI tools.

OPTIONS

A summary of options is included below.

	-		Print usage message
	-a		Add tRNAscan-SE citation
	-c str		Comment
	-f str		Substring Filter

-i filename

Single Input file (standard input by default)

	-j		Just produce a five-column feature table, à la trna2tbl (1).
	-m str		ReMark
	-n str		Annotation Name (normally “tRNA”).

-o filename

Single Output file (standard output by default)

	-p dir		Path to files
	-r dir		Path for Results
	-s		Ignore Pseudo tRNAs
	-t str		Annotation Title (normally “tRNAscan-SE”).
	-u		Ignore Undetermined tRNAs
	-x str		File selection suffix with -p ( .trna by default).

AUTHOR

The National Center for Biotechnology Information.

SEE ALSO

sequin (1), tbl2asn (1), trna2tbl (1).

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