Man page - asn2ff(1)
Packages contains this manual
- asn2ff(1)
- asn2gb(1)
- asntool(1)
- vecscreen(1)
- sortbyquote(1)
- trna2tbl(1)
- asn2xml(1)
- getpub(1)
- gil2bin(1)
- gene2xml(1)
- asn2all(1)
- checksub(1)
- subfuse(1)
- getmesh(1)
- taxblast(1)
- asn2asn(1)
- spidey(1)
- tbl2asn(1)
- asnval(1)
- asnmacro(1)
- idfetch(1)
- asndhuff(1)
- insdseqget(1)
- nps2gps(1)
- indexpub(1)
- findspl(1)
- asn2fsa(1)
- gbseqget(1)
- errhdr(1)
- asn2idx(1)
- trna2sap(1)
- cleanasn(1)
- asndisc(1)
- makeset(1)
- fa2htgs(1)
- debruijn(1)
apt-get install ncbi-tools-bin
Manual
ASN2FF
NAMESYNOPSIS
DESCRIPTION
OPTIONS
AUTHOR
SEE ALSO
NAME
asn2ff - convert ASN.1 biological data to a flat format (old version)
SYNOPSIS
asn2ff [ - ] [ -A X ] [ -B X ] [ -C ] [ -G ] [ -L F ] [ -M ] [ -R ] [ -V F ] [ -a filename ] [ -b ] [ -d ] [ -e ] [ -f b/p/e/s/x/z ] [ -g ] [ -h F ] [ -k F ] [ -l filename ] [ -m r/d/s/c/k/l/e/p ] [ -n F ] [ -o filename ] [ -p F ] [ -q ] [ -r filename ] [ -s ] [ -t ] [ -v F ] [ -w ] [ -y ] [ -z ]
DESCRIPTION
asn2ff converts descriptions of biological sequences from NCBI’s ASN.1 format to one of several flat-file formats. This program is built around a deprecated interface; please use asn2gb(1) instead.
OPTIONS
A summary of options is included below.
|
- |
Print usage message |
|||
|
-A X |
Show region starting at X (default is 0) |
|||
|
-B X |
Show region ending at X (default is last position) |
|||
|
-C |
Show Bankit comments |
|||
|
-G |
Output is one top bioseq only in genome view |
|||
|
-L F |
Use old (pre-Genbank 127.0) LOCUS line format |
|||
|
-M |
Output is map bioseqs only |
|||
|
-R |
For GenBank Release |
|||
|
-V F |
Don’t use VERSION |
-a filename
Filename for ASN.1 input (default is stdin)
|
-b |
Input asnfile in binary mode |
|||
|
-d |
Use SeqMgr indexing |
|||
|
-e |
Input is a Seq-entry |
-f b/p/e/s/x/z
Output Format:
|
b |
GenBank (default) |
|||
|
p |
GenPept |
|||
|
e |
EMBL |
|||
|
s |
PseudoEMBL |
|||
|
x |
GenBankSelect |
|||
|
z |
EMBLPEPT |
|||
|
-g |
Show gi numbers
|
-h F |
Hide sequence |
|||
|
-k F |
Don’t use complex sets (phy-set,mut-set, pop-set) |
-l filename
Log errors to filename
-m r/d/s/c/k/l/e/p
Output mode:
|
r |
release (default) |
|||
|
d |
dump |
|||
|
s |
Sequin |
|||
|
c |
Chromoscope |
|||
|
k |
dir-sub-debug |
|||
|
l |
dir-sub |
|||
|
e |
revise |
|||
|
p |
partial report |
|||
|
-n F |
Strict gene_binding
-o filename
Output Filename (default is stdout)
|
-p F |
Omit new gene features |
|||
|
-q |
Output is one top bioseq only |
-r filename
Output error logfile (default is stderr)
|
-s |
Input is a Seq-submit |
|||
|
-t |
Show verbose message text |
|||
|
-v F |
Suppress error messages |
|||
|
-w |
Use HTML output format |
|||
|
-y |
Print help format only |
|||
|
-z |
New algorithm for orgnames |
AUTHOR
The National Center for Biotechnology Information.
SEE ALSO
asn2all (1), asn2asn (1), asn2fsa (1), asn2gb (1), asn2xml (1), asndhuff (1).