Man page - gbseqget(1)

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Package:  ncbi-tools-bin
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Manuals in package:
• asn2ff(1)
• asn2gb(1)
• asntool(1)
• vecscreen(1)
• sortbyquote(1)
• trna2tbl(1)
• asn2xml(1)
• getpub(1)
• gil2bin(1)
• gene2xml(1)
• asn2all(1)
• checksub(1)
• subfuse(1)
• getmesh(1)
• taxblast(1)
• asn2asn(1)
• spidey(1)
• tbl2asn(1)
• asnval(1)
• asnmacro(1)
• idfetch(1)
• asndhuff(1)
• insdseqget(1)
• nps2gps(1)
• indexpub(1)
• findspl(1)
• asn2fsa(1)
• gbseqget(1)
• errhdr(1)
• asn2idx(1)
• trna2sap(1)
• cleanasn(1)
• asndisc(1)
• makeset(1)
• fa2htgs(1)
• debruijn(1)
Documentations in package:
• ncbi-tools-bin

Manual

GBSEQGET

NAME
SYNOPSIS
DESCRIPTION
OPTIONS
NOTES
AUTHOR
SEE ALSO

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NAME

gbseqget - format sequences from GenBank as an XML GBSet

SYNOPSIS

gbseqget [ - ] [ -d filename ] [ -i filename ] [ -m n/p/b ] [ -n ] [ -o filename ] [ -v ]

DESCRIPTION

gbseqget retrieves biological sequence data from GenBank (according to an input list of GI accession numbers) and prints it out as an XML GBSet document.

OPTIONS

A summary of options is included below.

-

Print usage message

-d filename

Input file name for date list (desired accessions, one per line, followed by a blank line and a list of allowed dates, also one per line)

-i filename

Input file name for GI list (default = stdin)

-m n/p/b

Molecule type:

	n		Nucleotide (default)
	p		Protein
	b		Both
	-n

Return only new records (for which the given GI refers to an old version)

-o filename

Output file name for the XML GBSet (default = stdout)

-v

Fetch SNP Variations

NOTES

The GBSet format is deprecated in favor of INSDSet, which you can produce by running insdseqget in place of gbseqget .

AUTHOR

The National Center for Biotechnology Information.

SEE ALSO

asn2gb (1), insdseqget (1).

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