Man page - nps2gps(1)

Packages contains this manual

Package:  ncbi-tools-bin
apt-get install ncbi-tools-bin

Manuals in package:
• asn2ff(1)
• asn2gb(1)
• asntool(1)
• vecscreen(1)
• sortbyquote(1)
• trna2tbl(1)
• asn2xml(1)
• getpub(1)
• gil2bin(1)
• gene2xml(1)
• asn2all(1)
• checksub(1)
• subfuse(1)
• getmesh(1)
• taxblast(1)
• asn2asn(1)
• spidey(1)
• tbl2asn(1)
• asnval(1)
• asnmacro(1)
• idfetch(1)
• asndhuff(1)
• insdseqget(1)
• nps2gps(1)
• indexpub(1)
• findspl(1)
• asn2fsa(1)
• gbseqget(1)
• errhdr(1)
• asn2idx(1)
• trna2sap(1)
• cleanasn(1)
• asndisc(1)
• makeset(1)
• fa2htgs(1)
• debruijn(1)
Documentations in package:
• ncbi-tools-bin

Manual

NPS2GPS

NAME
SYNOPSIS
DESCRIPTION
OPTIONS
AUTHOR
SEE ALSO

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NAME

nps2gps - convert nucleotide-protein sets to ASN.1 genomic product sets

SYNOPSIS

nps2gps [ - ] [ -B ] [ -D ] [ -F ] [ -G str ] [ -L ] [ -N ] [ -P ] [ -Q ] [ -R ] [ -S ] [ -T ] [ -U ] [ -f str ] [ -i filename ] [ -o filename ] [ -p path ] [ -r path ] [ -x str ]

DESCRIPTION

nps2gps converts NCBI Bioseq-sets from simple nucleotide-protein sets to full genomic product sets complete with mRNA transcripts, which it outputs as text ASN.1.

OPTIONS

A summary of options is included below.

	-		Print usage message
	-B		NG and NR rRNA
	-D		RefSeq mRNA Titles
	-F		Map by Feature ID
	-G str		General ID database name
	-L		Lock components in advance
	-N		Promote Non-coding RNAs
	-P		mRNA ID from Protein
	-Q		Special mRNA titles
	-R		Enable Remote fetching from ID
	-S		Special ncRNA on preRNA
	-T		Map by Transcript ID
	-U		Remove Unnecessary gene cross-references
	-f str		Substring filter

-i filename

Single input file (default = stdin)

-o filename

Single output file (default = stdout)

-p path

Path to files for batch conversion

-r path

Path for results of batch conversion

-x str

File selection suffix for batch conversion (default = .ent )

AUTHOR

The National Center for Biotechnology Information.

SEE ALSO

asn2asn (1), asn2ff (1), asn2gb (1), asn2xml (1), asndhuff (1).

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