Man page - vcf-merge(1)
Packages contains this manual
- vcf-query(1)
- vcf-stats(1)
- vcf-to-tab(1)
- vcf-concat(1)
- vcf-sort(1)
- vcf-indel-stats(1)
- vcf-phased-join(1)
- fill-aa(1)
- vcf-isec(1)
- vcf-consensus(1)
- vcf-tstv(1)
- vcf-merge(1)
- vcf-subset(1)
- vcf-contrast(1)
- vcf-fix-newlines(1)
- fill-an-ac(1)
- vcftools(1)
- vcf-validator(1)
- fill-fs(1)
- vcf-fix-ploidy(1)
- vcf-compare(1)
- fill-ref-md5(1)
- vcf-annotate(1)
- vcf-convert(1)
- vcf-shuffle-cols(1)
apt-get install vcftools
Manual
VCF-MERGE
NAMESYNOPSIS
DESCRIPTION
OPTIONS
NAME
vcf-merge - merge the bgzipped and tabix indexed VCF files
SYNOPSIS
merge-vcf [ OPTIONS ] file1.vcf file2.vcf.gz ... > out.vcf
DESCRIPTION
About: Merge the bgzipped and tabix indexed VCF files. (E.g. bgzip file.vcf; tabix -p vcf file.vcf.gz)
OPTIONS
-c , --chromosomes <list|file>
Same as -r , left for backward compatibility. Please do not use as it will be dropped in the future.
-d , --remove-duplicates
If there should be two consecutive rows with the same chr:pos, print only the first one.
-H , --vcf-header <file>
Use the VCF header
-h , -?, --help
This help message.
-r , --regions <list|file>
Do only the given regions (comma-separated list or one region per line in a file).
-s , --silent
Try to be a bit more silent, no warnings about duplicate lines.