Man page - fill-aa(1)

Packages contains this manual

Package:  vcftools
apt-get install vcftools

Manuals in package:
• vcf-query(1)
• vcf-stats(1)
• vcf-to-tab(1)
• vcf-concat(1)
• vcf-sort(1)
• vcf-indel-stats(1)
• vcf-phased-join(1)
• fill-aa(1)
• vcf-isec(1)
• vcf-consensus(1)
• vcf-tstv(1)
• vcf-merge(1)
• vcf-subset(1)
• vcf-contrast(1)
• vcf-fix-newlines(1)
• fill-an-ac(1)
• vcftools(1)
• vcf-validator(1)
• fill-fs(1)
• vcf-fix-ploidy(1)
• vcf-compare(1)
• fill-ref-md5(1)
• vcf-annotate(1)
• vcf-convert(1)
• vcf-shuffle-cols(1)
Documentations in package:
• vcftools

Manual

FILL-AA

NAME
SYNOPSIS
DESCRIPTION
OPTIONS

---

NAME

fill-aa - fill in ancestral alleles

SYNOPSIS

fill-aa [OPTIONS]

DESCRIPTION

zcat file.vcf.gz | fill-aa -a ancestral-alleles.fa.gz | bgzip -c > out.vcf.gz

OPTIONS

-a <file.gz>

file containing acestral alleles

---