Man page - vcf-fix-newlines(1)

Packages contains this manual

Package:  vcftools
apt-get install vcftools

Manuals in package:
• vcf-query(1)
• vcf-stats(1)
• vcf-to-tab(1)
• vcf-concat(1)
• vcf-sort(1)
• vcf-indel-stats(1)
• vcf-phased-join(1)
• fill-aa(1)
• vcf-isec(1)
• vcf-consensus(1)
• vcf-tstv(1)
• vcf-merge(1)
• vcf-subset(1)
• vcf-contrast(1)
• vcf-fix-newlines(1)
• fill-an-ac(1)
• vcftools(1)
• vcf-validator(1)
• fill-fs(1)
• vcf-fix-ploidy(1)
• vcf-compare(1)
• fill-ref-md5(1)
• vcf-annotate(1)
• vcf-convert(1)
• vcf-shuffle-cols(1)
Documentations in package:
• vcftools

Manual

VCF-FIX-NEWLINES

NAME
SYNOPSIS
DESCRIPTION
OPTIONS
Example:

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NAME

vcf-fix-newlines - fix newlines in VCF file

SYNOPSIS

vcf-fix-newlines [ OPTIONS ]

DESCRIPTION

About: Reads in a VCF file with any (commonly used) newline representation and outputs with the

current system’s newline representation.

OPTIONS

-i , --info

Report if the file is consistent with the current platform based.

-h , -?, --help

This help message.

Example:

vcf-fix-newlines -i file.vcf vcf-fix-newlines file.vcf.gz > out.vcf cat file.vcf | vcf-fix-newlines > out.vcf

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