Man page - nii2mnc(1)
Packages contains this manual
- nii2mnc(1)
- mincinfo(1)
- mincaverage(1)
- mincdiff(1)
- mincblob(1)
- mincconvert(1)
- mincresample(1)
- minclookup(1)
- mincgen(1)
- rawtominc(1)
- xfmconcat(1)
- mincview(1)
- xfm2def(1)
- minccmp(1)
- worldtovoxel(1)
- mincpik(1)
- vff2mnc(1)
- mnc2nii(1)
- xfmflip(1)
- mincdump(1)
- mincstats(1)
- mincmorph(1)
- minc_modify_header(1)
- mincmakescalar(1)
- voxeltoworld(1)
- mincexpand(1)
- mincsample(1)
- minccopy(1)
- mincwindow(1)
- transformtags(1)
- dcm2mnc(1)
- mincmakevector(1)
- mincextract(1)
- minccalc(1)
- mincheader(1)
- mincreshape(1)
- mincedit(1)
- minchistory(1)
- upet2mnc(1)
- xfminvert(1)
- mincmath(1)
- invert_raw_image(1)
- ecattominc(1)
- mincconcat(1)
- minctoraw(1)
- minctoecat(1)
apt-get install minc-tools
Manual
nii2mnc
NAMESYNOPSIS
DESCRIPTION
OPTIONS
Output voxel format
Analyze 7.5 specific options
Other options
Generic options for all commands
KNOWN BUGS
SEE ALSO
AUTHOR
COPYRIGHTS
NAME
nii2mnc - convert a NIfTI-1 or Analyze 7.5 format file to a MINC format file.
SYNOPSIS
nii2mnc [<options>] <infile> <outfile.mnc>
nii2mnc -help
DESCRIPTION
The nii2mnc command is used to convert "NIfTI-1" format files to MINC format. The NIfTI-1 format was developed by the members of the Neuroinformatics Technology Initiative’s Data Format Working Group (DFWG). The NIfTI-1 format is based upon the Mayo Clinic’s Analyze 7.5 format.
The name of the program is derived from the common filename suffixes used for NIfTI-1 and MINC files. NIfTI-1 defines two possible formats, a "header plus raw image" 2-file format, and a single-file format that includes both header information and the image data. As with Analyze 7.5, the 2-file format consists of one file with the suffix ".hdr" and another file with the extension ".img". In NIfTI-1 single-file format, the two files may be combined into a single file with a ".nii" filename suffix.
OPTIONS
Note that options can be specified in abbreviated form (as long as they are unique) and can be given anywhere on the command line.
Output voxel format
|
-float |
Save voxels in 32-bit floating point format |
-double
Save voxels in 64-bit floating point format
|
-byte |
Save voxels in 8-bit integer format |
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|
-short |
Save voxels in 16-bit integer format |
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|
-int |
Save voxels in 32-bit integer format |
-signed
Save voxels in signed (2’s complement) integer format
-unsigned
Save voxels in unsigned integer format
Analyze 7.5 specific options
-transverse
Assume data is in ZYX dimension order.
-sagittal
Assume data is in XZY dimension order.
-coronal
Assume data is in YZX dimension order.
|
-xyz |
Assume data is in XYZ dimension order. |
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|
-zxy |
Assume data is in ZXY dimension order. |
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|
-yxz |
Assume data is in YXZ dimension order. |
-flipx, -flipy, -flipz
Invert the samples along the given axis.
Other options
-noscanrange
Don’t scan data to determine valid range.
|
-quiet |
Quiet operation - do not print progress or debugging information. |
Generic options for all commands
|
-help |
Print summary of command-line options and abort |
-version
Print the program and library versions and abort
KNOWN BUGS
Current handling of NIfTI-1 qform and sform coordinate transforms should probably be revised as the NIfTI group clarifies the correct usage of these fields.
SEE ALSO
mnc2nii
AUTHOR
Robert Vincent (bert@bic.mni.mcgill.ca) with assistance from the NIfTI-1 library authored by Robert Cox et al.
COPYRIGHTS
Copyrights 2005 by Robert Vincent for the Montreal Neurological Institute.