Man page - mincpik(1)
Packages contains this manual
- nii2mnc(1)
- mincinfo(1)
- mincaverage(1)
- mincdiff(1)
- mincblob(1)
- mincconvert(1)
- mincresample(1)
- minclookup(1)
- mincgen(1)
- rawtominc(1)
- xfmconcat(1)
- mincview(1)
- xfm2def(1)
- minccmp(1)
- worldtovoxel(1)
- mincpik(1)
- vff2mnc(1)
- mnc2nii(1)
- xfmflip(1)
- mincdump(1)
- mincstats(1)
- mincmorph(1)
- minc_modify_header(1)
- mincmakescalar(1)
- voxeltoworld(1)
- mincexpand(1)
- mincsample(1)
- minccopy(1)
- mincwindow(1)
- transformtags(1)
- dcm2mnc(1)
- mincmakevector(1)
- mincextract(1)
- minccalc(1)
- mincheader(1)
- mincreshape(1)
- mincedit(1)
- minchistory(1)
- upet2mnc(1)
- xfminvert(1)
- mincmath(1)
- invert_raw_image(1)
- ecattominc(1)
- mincconcat(1)
- minctoraw(1)
- minctoecat(1)
apt-get install minc-tools
Manual
MINCPIK
NAMEDESCRIPTION
OPTIONS
NAME
mincpik - MNI medical image format tools
DESCRIPTION
Option h is ambiguous (help, horizontal) Usage:
mincpik [options] <infile>.mnc [<image.type>]
mincpik generates image files from MINC volumes using the Imagemagick convert utility. Use -help or -man for more information and examples
OPTIONS
|
-v , --verbose |
Be noisy when doing things
|
--version |
Print version number and exit
|
-?, --help |
Dump some quick help output
|
--man |
Dump a man page
|
-c --clobber |
overwrite the output file if it exists already
|
-f --fake |
do a dry run, (echo cmds only). This is usually used in combination with -verbose to echo commands only
|
--scale |
scaling factor for resulting image, by default images are output at twice their original resolution
|
--width |
autoscale the resulting image to have a fixed image width (in pixels)
|
--depth |
bitdepth for resulting image 8 or 16 (MSB machines only!)
|
--title |
add a title to the resulting image, if just this option is specified the text used for the title is the name of the input image file.
|
--title_text |
use the input string for the title [default: input-filename]. This option must be used in conjunction with -title
|
--title_size |
font point size for the title
|
--anot_bar |
create an annotated bar to match the image (use height of the output image)
Image range and lookup table options:
|
--range |
valid range of values for MINC file
|
--image_range |
range of image values to use for pixel intensity
|
--auto_range |
automatically determine image range using a 5 and 95% PcT. (histogram)
|
--lookup |
arguments to pass to minclookup
Slicing options:
|
-s --slice |
slice number to get. (note this is in voxel co-ordinates)
|
-z --axial --transverse |
get an axial/transverse (z) slice
|
-y --coronal |
get a coronal (y) slice
|
-x --sagittal |
get a sagital (x) slice
Triplanar options:
|
-t --triplanar |
create a triplanar view of the input file
|
--tilesize |
pixel size for each image in a triplanar
|
--sagittal_offset |
offset the sagittal slice from the centre
|
--sagittal_offset_perc |
offset the sagittal slice by a percentage from the centre
|
--vertical |
create a vertical triplanar view (Default)
|
--horizontal |
create a horizontal triplanar view