Man page - mincmorph(1)
Packages contains this manual
- nii2mnc(1)
- mincinfo(1)
- mincaverage(1)
- mincdiff(1)
- mincblob(1)
- mincconvert(1)
- mincresample(1)
- minclookup(1)
- mincgen(1)
- rawtominc(1)
- xfmconcat(1)
- mincview(1)
- xfm2def(1)
- minccmp(1)
- worldtovoxel(1)
- mincpik(1)
- vff2mnc(1)
- mnc2nii(1)
- xfmflip(1)
- mincdump(1)
- mincstats(1)
- mincmorph(1)
- minc_modify_header(1)
- mincmakescalar(1)
- voxeltoworld(1)
- mincexpand(1)
- mincsample(1)
- minccopy(1)
- mincwindow(1)
- transformtags(1)
- dcm2mnc(1)
- mincmakevector(1)
- mincextract(1)
- minccalc(1)
- mincheader(1)
- mincreshape(1)
- mincedit(1)
- minchistory(1)
- upet2mnc(1)
- xfminvert(1)
- mincmath(1)
- invert_raw_image(1)
- ecattominc(1)
- mincconcat(1)
- minctoraw(1)
- minctoecat(1)
apt-get install minc-tools
Manual
MINCMORPH
NAMESYNOPSIS
DESCRIPTION
Single morphological operations:
Successive morphological operations:
Generic options for all commands:
NAME
mincmorph - MNI medical image format tools
SYNOPSIS
mincmorph [ options ] <in.mnc> <out.mnc>
DESCRIPTION
Command-specific
options: General options:
-verbose
:
be verbose
-clobber :
clobber existing files
Outfile Options
-filetype
:
Use data type of the input file.
|
-byte : |
Write out byte data. |
-short :
Write out short integer data. (Default)
|
-int : |
Write out long integer data. |
-float :
Write out single-precision data.
-double :
Write out double-precision data.
-signed :
Write signed integer data.
-unsigned :
Write unsigned integer data.
Kernel Options
|
-2D04 : |
Use a 2D 4-connectivity kernel. |
|||
|
-2D08 : |
Use a 2D 8-connectivity kernel. |
|||
|
-3D06 : |
Use a 3D 6-connectivity kernel. (default) |
|||
|
-3D26 : |
Use a 3D 26-connectivity kernel. |
-kernel :
<kernel.kern> read in a custom kernel file
Morphology
Options
-floor
:
lowwer value for binarising or clamping
Default value: -1 .79769e+308
|
-ceil : |
upper value for binarising or clamping (incl) |
Default value: 1.79769e+308
-range :
range for binarising or clamping (incl)
Default value: -1 .79769e+308 1.79769e+308
-foreground :
foreground value
Default value: 1
-background :
background value
Default value: 0
Single morphological operations:
-binarise :
binarise volume using the input range
-clamp :
clamp volume using the input range
|
-pad : |
pad volume with respect to the current kernel ( -background to specify value) |
-erosion :
do a single erosion
-dilation :
do a single dilation
-median_dilation :
do a single median dilation (note: this is not a median filter!)
|
-open : |
open: dilation(erosion(X)) |
-close :
close: erosion(dilation(X))
-lowpass :
lowpass filter: close(open(X))
-highpass :
highpass filter: X - lowpass(X)
-convolve :
convolve file with kernel
-distance :
distance transform
-group :
label groups in ascending order
Successive morphological operations:
-successive :
Successive operations (Maximum: 100)
B[floor:ceil:fg:bg] - binarise in the range, using foreground and background K[floor:ceil:bg] - clamp between the specified range. Set other voxels to ’bg’ (default: 0) P[bg] - pad volume with respect to the current kernel using ’bg’ (default: 0) E - erosion D - dilation M - median dilation O - open C - close L - lowpass filter H - highpass filter X - convolve F - distance transform (binary input only - not checked) G - Label the groups in the volume in ascending order R[TYPE|file.kern] - (2D04|2D08|3D06|3D26) or read in a kernel file W[file.mnc] - write out current results I[cmp.mnc] - local xcorr between current file and cmp.mnc Default: "B"
Generic options for all commands:
|
-help : |
Print summary of command-line options and abort |
-version :
Print version number of program and exit
mincmorph -help