Man page - mincsample(1)

Packages contains this manual

Package:  minc-tools
apt-get install minc-tools

Manuals in package:
• nii2mnc(1)
• mincinfo(1)
• mincaverage(1)
• mincdiff(1)
• mincblob(1)
• mincconvert(1)
• mincresample(1)
• minclookup(1)
• mincgen(1)
• rawtominc(1)
• xfmconcat(1)
• mincview(1)
• xfm2def(1)
• minccmp(1)
• worldtovoxel(1)
• mincpik(1)
• vff2mnc(1)
• mnc2nii(1)
• xfmflip(1)
• mincdump(1)
• mincstats(1)
• mincmorph(1)
• minc_modify_header(1)
• mincmakescalar(1)
• voxeltoworld(1)
• mincexpand(1)
• mincsample(1)
• minccopy(1)
• mincwindow(1)
• transformtags(1)
• dcm2mnc(1)
• mincmakevector(1)
• mincextract(1)
• minccalc(1)
• mincheader(1)
• mincreshape(1)
• mincedit(1)
• minchistory(1)
• upet2mnc(1)
• xfminvert(1)
• mincmath(1)
• invert_raw_image(1)
• ecattominc(1)
• mincconcat(1)
• minctoraw(1)
• minctoecat(1)
Documentations in package:
• minc-tools

Manual

MINCSAMPLE

NAME
SYNOPSIS
DESCRIPTION
OPTIONS
AUTHOR
COPYRIGHTS

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NAME

mincsample - generate samplings from minc files.

SYNOPSIS

mincsample [<options>] <in1.mnc> [<in2.mnc> [<..>]]

DESCRIPTION

Mincsample produces a data sampling on STDOUT from an input series of minc files. The output can be either ascii (-ascii) or as a raw binary stream of doubles (-double). The output data is ordered first by file then voxel. When -ascii is used the data values from each file are separated by a tab and the sampling points with a newline. When using -double, no separators are used.

If -coords is also specified, the world co-ordinate at each sampling point will precede the data from each of the files. An optional -outfile argument can also be used to direct the output to a file and -append used to append the data to the file as opposed to overwriting the file.

By default all data points are written out (-all) the output of points can also be constrained to be points within a mask (-mask and -mask_val) and further by a random sampling of a sub-set of points via the -random_samples and -random_seed arguments

OPTIONS

-verbose

Print extra information during processing.

-quiet

Print only the output sampling data.

-clobber

Overwrite existing output files (when used with -outfile)

-max_buffer size

Specify the maximum size of the internal buffers (in kbytes). Default is 4096 (4MB).

-mask mask.mnc

Specify and input mask, only sampling points within this mask will be used.

-mask_val value

Specify the value to use from the mask (Default: 1).

-all

Sample all the data points.

-random_seed value

Specify the random seed value to use during random sampling, this is to enable reproducible runs. If no seed is given a semi-random seed will be chosen (from time).

-random_samples value

Specify the number of random samples to take from the input files. This value must be smaller than the maximum possible number of samples.

-sample sample.mnc

Output a mask file that corresponds to where samples were taken from.

-outfile file

Output sampling data to a file. (Default: STDOUT).

-append

Append output data to an existing file.

	-ascii		Write out data as ascii strings (Default).
	-ascii		Write out data as double precision floating-point values.

-coords

Write out world co-ordinates as well as sampling values.

-help

Print summary of command-line options and exit.

-version

Print the program’s version number and exit.

AUTHOR

Andrew Janke and Mark Griffin

COPYRIGHTS

Copyright © 2004 by Andrew Janke and Mark Griffin

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