Man page - last-map-probs(1)

Packages contains this manual

Package:  last-align
apt-get install last-align

Manuals in package:
• maf-cut(1)
• lastdb(1)
• last-train(1)
• last-pair-probs(1)
• last-merge-batches(1)
• maf-join(1)
• lastal(1)
• fasta-nr(1)
• maf-swap(1)
• last-map-probs(1)
• maf-convert(1)
• last-postmask(1)
• fastq-interleave(1)
• maf-sort(1)
• last-split(1)
• last-dotplot(1)
Documentations in package:
• last-align

Manual

LAST-MAP-PROBS

NAME
SYNOPSIS
DESCRIPTION
OPTIONS

---

NAME

last-map-probs - Add extra column with mapping probabilities

SYNOPSIS

last-map-probs [options] lastal-alignments

DESCRIPTION

Calculate a mismap probability for each alignment. This is the probability that the alignment does not reflect the origin of the query sequence, assuming that one reported alignment does reflect the origin of each query.

OPTIONS

-h , --help

show this help message and exit

-m M, --mismap = M

don’t write alignments with mismap probability > M (default: 0.01)

-s S, --score = S

don’t write alignments with score < S (default: e+t*ln[1000])

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