Man page - fastq-interleave(1)

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Manual

FASTQ-INTERLEAVE(1) User Commands FASTQ-INTERLEAVE(1)

fastq-interleave - Read 2 fastq files, and write them interleaved

fastq-interleave x.fastq y.fastq
fastq-interleave x.fastq.gz y.fastq.gz

Read 2 fastq files, and write them interleaved. Keep just the first word of header lines, and append "/1" and "/2" if they are otherwise identical. Assumes 1 fastq per 4 lines, i.e. no line wrapping.

March 2025 fastq-interleave 1609