Package - python3-gffutils
Primary informations
Download package: http://deb.debian.org/debian/pool/main/p/python-gffutils/python3-gffutils_0.13-2_all.deb (Size: 1016.4KiB)| Property | Value |
|---|---|
| Package | python3-gffutils |
| Source | python-gffutils |
| Version | 0.13-2 |
| Installed-Size | 9772 |
| Maintainer | Debian Med Packaging Team |
| Architecture | all |
| Depends | python3-argcomplete, python3-argh, python3-pyfaidx, python3:any, python3-biopython |
| Recommends | python3-pybedtools |
| Description | Work with GFF and GTF files in a flexible database framework |
| Description-md5 | a79ef5e6695b430db7b8b73d5ce44064 |
| Homepage | https://daler.github.io/gffutils |
| Section | science |
| Priority | optional |
| Filename | pool/main/p/python-gffutils/python3-gffutils_0.13-2_all.deb |
| Size | 1040784 |
| MD5sum | 115f29a69441439bdc843eb83cf07787 |
| SHA256 | 5af0bae37744b79ccb5b31aca4b686fb8bbd392755500791849df29f6c3b79f5 |
Files in package
- /usr/bin/gffutils-cli
- /usr/lib/python3/dist-packages/gffutils-0.13.egg-info/PKG-INFO
- /usr/lib/python3/dist-packages/gffutils-0.13.egg-info/dependency_links.txt
- /usr/lib/python3/dist-packages/gffutils-0.13.egg-info/requires.txt
- /usr/lib/python3/dist-packages/gffutils-0.13.egg-info/top_level.txt
- /usr/lib/python3/dist-packages/gffutils/__init__.py
- /usr/lib/python3/dist-packages/gffutils/attributes.py
- /usr/lib/python3/dist-packages/gffutils/bins.py
- /usr/lib/python3/dist-packages/gffutils/biopython_integration.py
- /usr/lib/python3/dist-packages/gffutils/constants.py
- /usr/lib/python3/dist-packages/gffutils/convert.py
- /usr/lib/python3/dist-packages/gffutils/create.py
- /usr/lib/python3/dist-packages/gffutils/exceptions.py
- /usr/lib/python3/dist-packages/gffutils/feature.py
- /usr/lib/python3/dist-packages/gffutils/gffwriter.py
- /usr/lib/python3/dist-packages/gffutils/helpers.py
- /usr/lib/python3/dist-packages/gffutils/inspect.py
- /usr/lib/python3/dist-packages/gffutils/interface.py
- /usr/lib/python3/dist-packages/gffutils/iterators.py
- /usr/lib/python3/dist-packages/gffutils/merge_criteria.py
- /usr/lib/python3/dist-packages/gffutils/parser.py
- /usr/lib/python3/dist-packages/gffutils/pybedtools_integration.py
- /usr/lib/python3/dist-packages/gffutils/scripts/gffutils-flybase-convert.py
- /usr/lib/python3/dist-packages/gffutils/test/__init__.py
- /usr/lib/python3/dist-packages/gffutils/test/attr_test_cases.py
- /usr/lib/python3/dist-packages/gffutils/test/conftest.py
- /usr/lib/python3/dist-packages/gffutils/test/data/F3-unique-3.v2.gff
- /usr/lib/python3/dist-packages/gffutils/test/data/FBgn0031208.gff
- /usr/lib/python3/dist-packages/gffutils/test/data/FBgn0031208.gtf
- /usr/lib/python3/dist-packages/gffutils/test/data/FBgn0031208.gtf.db
- /usr/lib/python3/dist-packages/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_gene_ids.txt
- /usr/lib/python3/dist-packages/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_transcript_ids.txt
- /usr/lib/python3/dist-packages/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.chromsizes.txt
- /usr/lib/python3/dist-packages/gffutils/test/data/c_elegans_WS199_ann_gff.txt
- /usr/lib/python3/dist-packages/gffutils/test/data/c_elegans_WS199_dna_shortened.fa
- /usr/lib/python3/dist-packages/gffutils/test/data/c_elegans_WS199_shortened_gff.txt
- /usr/lib/python3/dist-packages/gffutils/test/data/dm6-chr2L.fa
- /usr/lib/python3/dist-packages/gffutils/test/data/dm6-chr2L.fa.fai
- /usr/lib/python3/dist-packages/gffutils/test/data/dmel-all-no-analysis-r5.49_50k_lines.gff
- /usr/lib/python3/dist-packages/gffutils/test/data/download-large-annotation-files.sh
- /usr/lib/python3/dist-packages/gffutils/test/data/ensembl_gtf.txt
- /usr/lib/python3/dist-packages/gffutils/test/data/gencode-v19.gtf
- /usr/lib/python3/dist-packages/gffutils/test/data/gencode.vM8.5000_gene_ids.txt
- /usr/lib/python3/dist-packages/gffutils/test/data/gencode.vM8.5000_transcript_ids.txt
- /usr/lib/python3/dist-packages/gffutils/test/data/gencode.vM8.chromsizes.txt
- /usr/lib/python3/dist-packages/gffutils/test/data/gff_example1.gff3
- /usr/lib/python3/dist-packages/gffutils/test/data/gff_example1.gff3.gz
- /usr/lib/python3/dist-packages/gffutils/test/data/glimmer_nokeyval.gff3
- /usr/lib/python3/dist-packages/gffutils/test/data/gms2_example.gff3
- /usr/lib/python3/dist-packages/gffutils/test/data/hybrid1.gff3
- /usr/lib/python3/dist-packages/gffutils/test/data/intro_docs_example.gff
- /usr/lib/python3/dist-packages/gffutils/test/data/issue167.gff
- /usr/lib/python3/dist-packages/gffutils/test/data/issue174.gtf
- /usr/lib/python3/dist-packages/gffutils/test/data/issue_197.gff
- /usr/lib/python3/dist-packages/gffutils/test/data/jgi_gff2.txt
- /usr/lib/python3/dist-packages/gffutils/test/data/keep-order-test.gtf
- /usr/lib/python3/dist-packages/gffutils/test/data/keyval_sep_in_attrs.gff
- /usr/lib/python3/dist-packages/gffutils/test/data/mouse_extra_comma.gff3
- /usr/lib/python3/dist-packages/gffutils/test/data/ncbi_gff3.txt
- /usr/lib/python3/dist-packages/gffutils/test/data/nonascii
- /usr/lib/python3/dist-packages/gffutils/test/data/random-chr.gff
- /usr/lib/python3/dist-packages/gffutils/test/data/sharr.gtf
- /usr/lib/python3/dist-packages/gffutils/test/data/synthetic.gff3
- /usr/lib/python3/dist-packages/gffutils/test/data/unsanitized.gff
- /usr/lib/python3/dist-packages/gffutils/test/data/wormbase_gff2.txt
- /usr/lib/python3/dist-packages/gffutils/test/data/wormbase_gff2_alt.txt
- /usr/lib/python3/dist-packages/gffutils/test/expected.py
- /usr/lib/python3/dist-packages/gffutils/test/feature_test.py
- /usr/lib/python3/dist-packages/gffutils/test/helpers_test.py
- /usr/lib/python3/dist-packages/gffutils/test/parser_test.py
- /usr/lib/python3/dist-packages/gffutils/test/performance_evaluation.py
- /usr/lib/python3/dist-packages/gffutils/test/synth_test_base.py
- /usr/lib/python3/dist-packages/gffutils/test/test_1.py
- /usr/lib/python3/dist-packages/gffutils/test/test_biopython_integration.py
- /usr/lib/python3/dist-packages/gffutils/test/test_cli.py
- /usr/lib/python3/dist-packages/gffutils/test/test_issues.py
- /usr/lib/python3/dist-packages/gffutils/test/test_iterators.py
- /usr/lib/python3/dist-packages/gffutils/test/test_merge.py
- /usr/lib/python3/dist-packages/gffutils/test/test_merge_all.py
- /usr/lib/python3/dist-packages/gffutils/version.py
- /usr/share/doc/python3-gffutils/README.Debian
- /usr/share/doc/python3-gffutils/README.test
- /usr/share/doc/python3-gffutils/changelog.Debian.gz
- /usr/share/doc/python3-gffutils/copyright
- /usr/share/doc/python3-gffutils/run-unit-test
- /usr/share/lintian/overrides/python3-gffutils
- /usr/share/man/man1/gffutils-cli-children.1.gz
- /usr/share/man/man1/gffutils-cli-clean.1.gz
- /usr/share/man/man1/gffutils-cli-common.1.gz
- /usr/share/man/man1/gffutils-cli-create.1.gz
- /usr/share/man/man1/gffutils-cli-fetch.1.gz
- /usr/share/man/man1/gffutils-cli-parents.1.gz
- /usr/share/man/man1/gffutils-cli-region.1.gz
- /usr/share/man/man1/gffutils-cli-rmdups.1.gz
- /usr/share/man/man1/gffutils-cli-sanitize.1.gz
- /usr/share/man/man1/gffutils-cli.1.gz