Man page - gffutils-cli-sanitize(1)

Packages contains this manual

Package:  python3-gffutils
apt-get install python3-gffutils

Manuals in package:
• gffutils-cli(1)
• gffutils-cli-clean(1)
• gffutils-cli-sanitize(1)
• gffutils-cli-common(1)
• gffutils-cli-region(1)
• gffutils-cli-create(1)
• gffutils-cli-rmdups(1)
• gffutils-cli-parents(1)
• gffutils-cli-fetch(1)
• gffutils-cli-children(1)
Documentations in package:
• python3-gffutils

Manual

GFFUTILS-CLI_SANITIZE

NAME
DESCRIPTION
positional arguments:
options:

---

NAME

gffutils-cli_sanitize - Sanitize a GFF file

DESCRIPTION

usage: gffutils-cli sanitize [-h] [--in-memory] [--in-place] filename

Sanitize a GFF file. Might get merged with clean feature later.

Cleans and adds useful annotations to a GFF file:

- Ensures that start > end in all entries - Adds an entry id (eid) to each entry to make files grep-able

Outputs result to stdout unless asked to sanitize in place.

positional arguments:

filename

GFF or GTF file to use (or GFF database.)

options:

-h , --help

show this help message and exit

--in-memory

Load GFF into memory for processing. (default: True)

--in-place

Sanitize file in-place: overwrites current file with sanitized version. (default: False)

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